Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017053.1-P | Field mustard | cytosol | 99.5 | 99.5 |
| CDX93238 | Canola | cytosol | 97.24 | 97.98 |
| CDY07638 | Canola | cytosol | 84.46 | 84.25 |
| AT2G39760.1 | Thale cress | cytosol | 84.21 | 82.35 |
| CDY61778 | Canola | cytosol | 83.96 | 79.38 |
| VIT_13s0019g02260.t01 | Wine grape | cytosol | 66.67 | 65.52 |
| Solyc05g052960.2.1 | Tomato | cytosol | 66.17 | 64.71 |
| PGSC0003DMT400069942 | Potato | cytosol | 66.17 | 64.71 |
| GSMUA_Achr7P10650_001 | Banana | cytosol | 64.41 | 63.46 |
| GSMUA_Achr10P... | Banana | cytosol | 29.57 | 62.43 |
| KRH31032 | Soybean | nucleus | 64.91 | 62.41 |
| KRG97837 | Soybean | cytosol | 64.66 | 62.32 |
| TraesCS2A01G255800.1 | Wheat | cytosol | 58.4 | 58.84 |
| TraesCS2D01G266900.1 | Wheat | cytosol | 58.4 | 58.84 |
| Os07t0101400-01 | Rice | cytosol | 57.89 | 58.48 |
| CDX93236 | Canola | cytosol | 58.4 | 57.11 |
| EER97813 | Sorghum | plastid | 57.14 | 56.72 |
| CDY58342 | Canola | cytosol | 55.89 | 55.34 |
| CDY66705 | Canola | cytosol | 55.64 | 55.09 |
| CDY08064 | Canola | cytosol | 55.89 | 54.79 |
| CDY05245 | Canola | cytosol | 53.63 | 54.04 |
| HORVU2Hr1G064920.1 | Barley | plastid | 58.15 | 53.95 |
| CDY24708 | Canola | cytosol | 54.14 | 53.6 |
| CDX70860 | Canola | cytosol | 55.39 | 50.23 |
| CDX92567 | Canola | cytosol | 55.14 | 50.11 |
| Zm00001d007888_P002 | Maize | plastid | 53.88 | 50.0 |
| CDY18844 | Canola | cytosol | 53.63 | 49.88 |
| CDX88828 | Canola | plastid | 50.13 | 48.78 |
| CDX70957 | Canola | plastid | 50.13 | 48.78 |
| CDY09093 | Canola | cytosol, plastid | 44.86 | 48.77 |
| CDY13941 | Canola | cytosol | 53.63 | 48.75 |
| CDY02591 | Canola | cytosol | 48.62 | 48.5 |
| CDY29955 | Canola | plastid | 53.63 | 47.66 |
| CDY71585 | Canola | cytosol | 20.05 | 39.6 |
| CDY67137 | Canola | endoplasmic reticulum | 33.83 | 37.92 |
| CDY16586 | Canola | cytosol | 15.54 | 35.63 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | InterPro:BPM_C | InterPro:BTB/POZ_dom |
| EnsemblPlants:CDY07031 | ProteinID:CDY07031 | ProteinID:CDY07031.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00123347001 | InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | PFAM:PF00651 |
| PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF54 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00061 |
| SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like | UniParc:UPI0004EF09D3 | SEG:seg |
Description
BnaA04g22840D
Coordinates
chrLK031974:+:752361..755004
Molecular Weight (calculated)
43965.4 Da
IEP (calculated)
7.070
GRAVY (calculated)
-0.159
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASHPNHDS VSTTVMETVN GSHQFTIKGY SLAKGMSPGR YIQSDVFSVN GYDWVIYFYP DGKNPEENST YVSLFIALAS DSSDIRALFE LTLMDQSGRG
101: RHKVHSHFDR ALEGGPYTLK YKGSMWGYKR FLRRTALEAS DYLKDDCLII NCTVGVVRAR LECPKQFGIV PPPSNMGQGL KDLLDSELGC DIAFQVGEET
201: YKAHKLILAA RSPVFRAQFY GPVGNNSVDR VVIEDMEPSI FKAMLSFIYT DVLPDVHEIT GSTSTASFTN MIQHLLAAAD LYDLGRLKIL CEAFLCEELN
301: VDNVATTLAL ADQHQFLQLK AFCLKFVASP ANLRAVMKSE GFKHLNQSCP SVLPELLNTV AAADKSSTSS SGQSSKKRSV SSVLGCDTST TNARQVRRT
101: RHKVHSHFDR ALEGGPYTLK YKGSMWGYKR FLRRTALEAS DYLKDDCLII NCTVGVVRAR LECPKQFGIV PPPSNMGQGL KDLLDSELGC DIAFQVGEET
201: YKAHKLILAA RSPVFRAQFY GPVGNNSVDR VVIEDMEPSI FKAMLSFIYT DVLPDVHEIT GSTSTASFTN MIQHLLAAAD LYDLGRLKIL CEAFLCEELN
301: VDNVATTLAL ADQHQFLQLK AFCLKFVASP ANLRAVMKSE GFKHLNQSCP SVLPELLNTV AAADKSSTSS SGQSSKKRSV SSVLGCDTST TNARQVRRT
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
Arabidopsis Description
BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.