Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G21010.1 | CDX93236 | AT2G39760.1 | 15618422 |
| AT5G21010.1 | CDX93238 | AT2G39760.1 | 15618422 |
| AT5G21010.1 | CDY07031 | AT2G39760.1 | 15618422 |
| AT5G21010.1 | CDY07638 | AT2G39760.1 | 15618422 |
| AT5G21010.1 | CDY61778 | AT2G39760.1 | 15618422 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16586 | Canola | cytosol | 77.23 | 89.66 |
| CDX88828 | Canola | plastid | 86.63 | 42.68 |
| CDX70957 | Canola | plastid | 86.14 | 42.44 |
| AT5G21010.1 | Thale cress | cytosol | 83.66 | 41.22 |
| CDY67137 | Canola | endoplasmic reticulum | 58.42 | 33.15 |
| CDY09093 | Canola | cytosol, plastid | 58.42 | 32.15 |
| KRH73429 | Soybean | cytosol, plastid | 58.91 | 30.05 |
| KRH14738 | Soybean | cytosol | 58.91 | 30.05 |
| PGSC0003DMT400070468 | Potato | cytosol | 60.4 | 29.9 |
| VIT_06s0009g01030.t01 | Wine grape | cytosol | 62.38 | 29.79 |
| Solyc11g072070.1.1 | Tomato | cytosol | 59.9 | 29.66 |
| PGSC0003DMT400058456 | Potato | cytosol | 59.41 | 29.63 |
| HORVU5Hr1G104190.1 | Barley | cytosol | 58.91 | 29.46 |
| Solyc01g009060.2.1 | Tomato | cytosol | 58.91 | 29.38 |
| GSMUA_Achr7P27230_001 | Banana | cytosol | 55.45 | 28.5 |
| GSMUA_Achr4P14800_001 | Banana | cytosol | 54.46 | 27.99 |
| TraesCS2D01G246900.1 | Wheat | cytosol, plastid | 58.91 | 27.93 |
| TraesCS2B01G262200.1 | Wheat | cytosol | 58.91 | 27.93 |
| TraesCS2A01G237800.1 | Wheat | cytosol | 58.91 | 27.93 |
| Zm00001d013094_P001 | Maize | cytosol | 58.91 | 27.8 |
| Zm00001d034400_P003 | Maize | cytosol | 58.42 | 27.57 |
| EER90755 | Sorghum | cytosol | 58.42 | 27.51 |
| GSMUA_Achr5P08970_001 | Banana | cytosol | 54.46 | 27.36 |
| TraesCS5A01G429400.2 | Wheat | cytosol | 58.91 | 27.23 |
| Os07t0167200-01 | Rice | cytosol | 56.93 | 27.12 |
| TraesCS5B01G431400.2 | Wheat | cytosol | 57.92 | 26.77 |
| KXG34465 | Sorghum | cytosol | 56.93 | 26.08 |
| CDY29955 | Canola | plastid | 57.43 | 25.84 |
| TraesCS5D01G437400.1 | Wheat | cytosol | 58.91 | 25.81 |
| HORVU2Hr1G055140.1 | Barley | cytosol | 58.42 | 25.71 |
| Zm00001d018887_P002 | Maize | cytosol | 54.95 | 25.69 |
| CDY02591 | Canola | cytosol | 43.56 | 22.0 |
| CDY58342 | Canola | cytosol | 43.07 | 21.59 |
| CDY08064 | Canola | cytosol | 43.07 | 21.38 |
| CDY66705 | Canola | cytosol | 42.08 | 21.09 |
| CDY05245 | Canola | cytosol | 41.09 | 20.96 |
| CDY24708 | Canola | cytosol | 41.09 | 20.6 |
| CDX93238 | Canola | cytosol | 39.6 | 20.2 |
| CDY07031 | Canola | cytosol | 39.6 | 20.05 |
| CDY18844 | Canola | cytosol | 42.57 | 20.05 |
| CDX92567 | Canola | cytosol | 43.56 | 20.05 |
| CDX70860 | Canola | cytosol | 43.07 | 19.77 |
| CDY07638 | Canola | cytosol | 39.11 | 19.75 |
| CDY13941 | Canola | cytosol | 41.58 | 19.13 |
| CDY61778 | Canola | cytosol | 39.11 | 18.72 |
| CDX93236 | Canola | cytosol | 36.14 | 17.89 |
| KXG25976 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY71585 | EnsemblPlantsGene:GSBRNA2T00017434001 | Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:BPM_C | InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | PANTHER:PTHR24411 |
| PANTHER:PTHR24411:SF53 | PFAM:PF00651 | PFscan:PS50097 | ProteinID:CDY71585 | ProteinID:CDY71585.1 | SEG:seg |
| SMART:SM00225 | SUPFAM:SSF54695 | UniParc:UPI0004EEA9C8 | UniProt:A0A078JYT4 | MapMan:35.1 | : |
Description
BnaCnng73550DBnaCnng73550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYT4]
Coordinates
chrLK046500:+:1226..2247
Molecular Weight (calculated)
22122.5 Da
IEP (calculated)
6.671
GRAVY (calculated)
-0.094
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSDVTFNI AGDKFQAHKL VLAARSPFFK SKFSNELEPN STEVTINDLE PKVFKALLQF IYKDSLPEEV EPTLIVKLLA AADKYYLNRL RLLCESHICK
101: GVSVKSVAKI LALAHIYKAT ELKSVCLKLT AENLAAVLET DGYQQQKDEC LSLQSELLKA VAAFEESSHS IGGAMSLSVW AQLSDGGGGG DTSSRHVRQR
201: TT
101: GVSVKSVAKI LALAHIYKAT ELKSVCLKLT AENLAAVLET DGYQQQKDEC LSLQSELLKA VAAFEESSHS IGGAMSLSVW AQLSDGGGGG DTSSRHVRQR
201: TT
001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED
Arabidopsis Description
BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.