Factsheet for VIT_06s0009g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01
VIT_13s0019g02260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280
AT3G43700.1	VIT_13s0019g02260.t01	AT2G39760.1	15618422
AT5G21010.1	VIT_13s0019g02260.t01	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25976	Sorghum	cytosol	26.0	90.91
PGSC0003DMT400058456	Potato	cytosol	77.07	80.49
Solyc01g009060.2.1	Tomato	cytosol	76.12	79.51
PGSC0003DMT400070468	Potato	cytosol	74.23	76.96
Solyc11g072070.1.1	Tomato	cytosol	73.76	76.47
GSMUA_Achr5P08970_001	Banana	cytosol	72.1	75.87
KRH73429	Soybean	cytosol, plastid	70.92	75.76
GSMUA_Achr7P27230_001	Banana	cytosol	70.21	75.57
GSMUA_Achr4P14800_001	Banana	cytosol	69.74	75.06
KRH14738	Soybean	cytosol	70.21	75.0
VIT_08s0056g01670.t01	Wine grape	plastid	75.65	74.25
Os07t0167200-01	Rice	cytosol	74.23	74.06
HORVU5Hr1G104190.1	Barley	cytosol	70.45	73.76
TraesCS2B01G262200.1	Wheat	cytosol	74.0	73.47
TraesCS2D01G246900.1	Wheat	cytosol, plastid	73.29	72.77
TraesCS2A01G237800.1	Wheat	cytosol	73.05	72.54
Zm00001d013094_P001	Maize	cytosol	72.81	71.96
Zm00001d034400_P003	Maize	cytosol	71.87	71.03
EER90755	Sorghum	cytosol	71.87	70.86
Zm00001d018887_P002	Maize	cytosol	71.16	69.68
CDX88828	Canola	plastid	67.38	69.51
Bra006591.1-P	Field mustard	plastid	67.14	69.27
TraesCS5A01G429400.2	Wheat	cytosol	71.16	68.88
CDX70957	Canola	plastid	66.67	68.78
TraesCS5B01G431400.2	Wheat	cytosol	70.92	68.65
AT5G21010.1	Thale cress	cytosol	66.43	68.54
KXG34465	Sorghum	cytosol	71.39	68.48
HORVU2Hr1G055140.1	Barley	cytosol	73.29	67.54
AT3G43700.1	Thale cress	plastid	65.01	66.27
TraesCS5D01G437400.1	Wheat	cytosol	71.63	65.73
CDY09093	Canola	cytosol, plastid	56.74	65.4
Bra020142.1-P	Field mustard	plastid	64.07	65.3
CDY71585	Canola	cytosol	29.79	62.38
VIT_07s0104g00570.t01	Wine grape	cytosol	55.79	58.71
CDY16586	Canola	cytosol	24.11	58.62
VIT_13s0019g02260.t01	Wine grape	cytosol	55.56	57.88
VIT_05s0020g02520.t01	Wine grape	plastid	55.56	57.6

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100259862	wikigene:100259862	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1
InterPro:BPM_C	InterPro:BTB/POZ_dom	ProteinID:CCB49179	ProteinID:CCB49179.1	UniProt:F6HA75	EMBL:FN595504
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
EntrezGene:LOC100259862	wikigene:LOC100259862	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144
PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599
SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000210A6DD	ArrayExpress:VIT_06s0009g01030	EnsemblPlantsGene:VIT_06s0009g01030	EnsemblPlants:VIT_06s0009g01030.t01
RefSeq:XP_002277148	RefSeq:XP_002277148.1	RefSeq:XP_003632235	RefSeq:XP_003632235.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:12340078..12351604

Molecular Weight (calculated)

46482.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.219

Length

423 amino acids

Sequence
(BLAST)

001: MAEQGGGGGG GGSRGEKNMA VASPTSSRSV TETVNGSHKF VIQGYSLAKG MGVGKHIASD NFTVGGYQWA IYFYPDGKNP EDNSTYVSVF IALASEGNDV
101: RALFELTLLD QSGKGKHKVH SHFDRSLESG PYTLKYRGSM WGYKRFFRRA LLETSDFLKD DCLKINCTVG VVVSAIDCSR LHSIQVPDSD IGAHFGVLLE
201: NMEGSDVVFD VAGEKFHAHK LVLAARSPVF RNEFFDRLEE DTQEVVITDL EPKVFKAMLH FIYRDALIED VEMVASSSTC ASSESDTLME KLLAAADKYG
301: LARLRRMCES HICKDISVHT VAKTLALADR YHATELKAVC LRFAAENLAA EPSLFACFWH LAVMRSEGFN YLKENFPALQ SEILKTVAGC EEDCSSGGGK
401: TRSVWAQLSD GGDTNGRRVR QRT

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.