CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93236
CDX93238
CDY07031
CDY07638
CDY61778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G21010.1	CDX93236	AT2G39760.1	15618422
AT5G21010.1	CDX93238	AT2G39760.1	15618422
AT5G21010.1	CDY07031	AT2G39760.1	15618422
AT5G21010.1	CDY07638	AT2G39760.1	15618422
AT5G21010.1	CDY61778	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020142.1-P	Field mustard	plastid	94.01	83.13
KXG25976	Sorghum	cytosol	25.61	77.69
CDX70957	Canola	plastid	83.11	74.39
CDX88828	Canola	plastid	82.29	73.66
AT5G21010.1	Thale cress	cytosol	79.02	70.73
KRH73429	Soybean	cytosol, plastid	63.76	59.09
KRH14738	Soybean	cytosol	63.22	58.59
CDY71585	Canola	cytosol	32.15	58.42
GSMUA_Achr7P27230_001	Banana	cytosol	62.4	58.27
GSMUA_Achr4P14800_001	Banana	cytosol	62.13	58.02
HORVU5Hr1G104190.1	Barley	cytosol	63.76	57.92
VIT_06s0009g01030.t01	Wine grape	cytosol	65.4	56.74
GSMUA_Achr5P08970_001	Banana	cytosol	61.85	56.47
PGSC0003DMT400070468	Potato	cytosol	61.04	54.9
PGSC0003DMT400058456	Potato	cytosol	60.49	54.81
Solyc11g072070.1.1	Tomato	cytosol	60.76	54.66
TraesCS2A01G237800.1	Wheat	cytosol	62.94	54.23
TraesCS2B01G262200.1	Wheat	cytosol	62.94	54.23
CDY16586	Canola	cytosol	25.61	54.02
TraesCS5A01G429400.2	Wheat	cytosol	64.31	54.0
TraesCS2D01G246900.1	Wheat	cytosol, plastid	62.67	53.99
Solyc01g009060.2.1	Tomato	cytosol	59.4	53.83
Os07t0167200-01	Rice	cytosol	62.13	53.77
TraesCS5B01G431400.2	Wheat	cytosol	63.49	53.32
Zm00001d034400_P003	Maize	cytosol	62.13	53.27
Zm00001d013094_P001	Maize	cytosol	61.85	53.04
EER90755	Sorghum	cytosol	61.31	52.45
Zm00001d018887_P002	Maize	cytosol	60.49	51.39
KXG34465	Sorghum	cytosol	61.31	51.02
TraesCS5D01G437400.1	Wheat	cytosol	63.49	50.54
HORVU2Hr1G055140.1	Barley	cytosol	62.67	50.11
CDY29955	Canola	plastid	60.22	49.22
CDY58342	Canola	cytosol	50.14	45.66
CDY08064	Canola	cytosol	50.14	45.21
CDX93238	Canola	cytosol	48.77	45.2
CDY07031	Canola	cytosol	48.77	44.86
CDY05245	Canola	cytosol	48.23	44.7
CDY07638	Canola	cytosol	48.5	44.5
CDY24708	Canola	cytosol	48.5	44.17
CDY66705	Canola	cytosol	48.23	43.92
CDY61778	Canola	cytosol	48.77	42.42
CDY18844	Canola	cytosol	49.05	41.96
CDX70860	Canola	cytosol	47.41	39.55
CDX92567	Canola	cytosol	47.14	39.41
CDY67137	Canola	endoplasmic reticulum	37.06	38.2
CDY13941	Canola	cytosol	45.5	38.04
CDY02591	Canola	cytosol	40.87	37.5
CDX93236	Canola	cytosol	28.88	25.98

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A078FB73	InterPro:BTB/POZ_dom
EnsemblPlants:CDY09093	ProteinID:CDY09093	ProteinID:CDY09093.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00001304001	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF53	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0004EE46C3
SEG:seg	:	:	:	:	:

Description

BnaA02g05190DBnaA02g05190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB73]

Coordinates

chrLK031993:+:36121..38120

Molecular Weight (calculated)

40793.2 Da

IEP (calculated)

6.938

GRAVY (calculated)

-0.022

Length

367 amino acids

Sequence
(BLAST)

001: MSGSNPDRAS SPTSSRSVTK TVNGSHQFVI RGYRLAKGMG VGKHIASDNF SVGGYQWEIF FFPDGKNPED NSAYVSVFIA LASEGSEVRA LFELSLVDQS
101: GKGNHKVHSH FERTLDTGPY TLKYKGSMWG YKRFIRRTQL ETSDFLKDDC LIINCTVGVV VSEVQRPQLH SVRVPDSEIG SHFGVLLDSM EGSDVTFDIA
201: GEKFQAHKLV LAARSPFFKS KILNELGANN TEVTINDLEP KVFKALLQFM YRDSLPEDVE PVTTLTFEFL TLPEIYETLV VKLLEAAEKY GMNRLRLLCE
301: ARICKGVSVK SVAKILALAD RYKATELKSA CLLFTAENLA GMLLILESRV DTILCFGFLV LMGIKVE

Best Arabidopsis Sequence Match ( AT5G21010.1 )
(BLAST)

001: MSESVIQGSN PDRVLSPTSS KSVTQTVNGS HQFVIQGYSL AKGMGIGKHI ASDNFSVGGY QWGIFFYPDG KNPEDNSSYV SVFIALASEG TEVRALFELA
101: LVDQSGKGKH KVHSHFERSL DGGPYTLKYR GSMWGYKRFF RRSILETSDY LKDDCLIINC TVGVVVSEIL CPQLHSVHVP DSELGSHFGV LLDSMEGSDI
201: TFNIAGEKFL AHKLVLAARS PFFKSKFFSE FEANNTEVTI NDLEPKVFKA LLQFMYKDSL PEDVEPATAH TFERLKLSEI YETLIVKVLA AADKYDLIRL
301: RLLCESHICK GVSVKSVAKI LALADRYNAK ELKGVCLKFT AENLAAVLET DAYQQMKDEC VTLQSELLKA VAGHEEGSNS TGGAKSQSVW AQLSDGGGDT
401: TSRHVRQRTT

Arabidopsis Description

BPM5BTB/POZ and MATH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q1EBV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.