CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97837
KRG99095
KRH31032
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	KRG99095	AT1G26830.1	15772280
AT3G43700.1	KRH45896	AT1G26830.1	15772280
AT3G43700.1	KRH70713	AT1G26830.1	15772280
AT3G43700.1	KRG97837	AT2G39760.1	15618422
AT3G43700.1	KRH31032	AT2G39760.1	15618422
AT5G21010.1	KRG97837	AT2G39760.1	15618422
AT5G21010.1	KRH31032	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14738	Soybean	cytosol	93.43	93.43
KXG25976	Sorghum	cytosol	25.51	83.47
GSMUA_Achr4P14800_001	Banana	cytosol	71.21	71.76
GSMUA_Achr7P27230_001	Banana	cytosol	70.96	71.5
GSMUA_Achr5P08970_001	Banana	cytosol	72.22	71.14
VIT_06s0009g01030.t01	Wine grape	cytosol	75.76	70.92
PGSC0003DMT400058456	Potato	cytosol	72.47	70.86
Solyc01g009060.2.1	Tomato	cytosol	71.72	70.12
Solyc11g072070.1.1	Tomato	cytosol	71.72	69.61
PGSC0003DMT400070468	Potato	cytosol	71.46	69.36
Os07t0167200-01	Rice	cytosol	72.73	67.92
TraesCS2A01G237800.1	Wheat	cytosol	72.98	67.84
TraesCS2B01G262200.1	Wheat	cytosol	72.98	67.84
TraesCS2D01G246900.1	Wheat	cytosol, plastid	72.73	67.61
HORVU5Hr1G104190.1	Barley	cytosol	68.94	67.57
Zm00001d013094_P001	Maize	cytosol	71.46	66.12
Zm00001d034400_P003	Maize	cytosol	71.21	65.89
AT5G21010.1	Thale cress	cytosol	68.18	65.85
Bra006591.1-P	Field mustard	plastid	68.18	65.85
CDX88828	Canola	plastid	68.18	65.85
CDX70957	Canola	plastid	67.93	65.61
EER90755	Sorghum	cytosol	70.96	65.5
KRG94896	Soybean	mitochondrion	70.45	64.58
Zm00001d018887_P002	Maize	cytosol	70.2	64.35
KRH06640	Soybean	mitochondrion, plastid	70.2	64.06
KXG34465	Sorghum	cytosol	71.21	63.95
CDY09093	Canola	cytosol, plastid	59.09	63.76
HORVU2Hr1G055140.1	Barley	cytosol	73.23	63.18
TraesCS5A01G429400.2	Wheat	cytosol	69.7	63.16
Bra020142.1-P	Field mustard	plastid	66.16	63.13
KRG94057	Soybean	mitochondrion	29.04	62.84
TraesCS5B01G431400.2	Wheat	cytosol	68.94	62.47
KRG88614	Soybean	mitochondrion	48.48	61.54
AT3G43700.1	Thale cress	plastid	64.39	61.45
KRG94056	Soybean	cytosol	12.12	60.76
KRG88616	Soybean	cytosol	35.61	60.26
KRG94069	Soybean	cytosol	53.79	59.66
KRG94050	Soybean	mitochondrion	56.82	59.52
KRG88615	Soybean	mitochondrion	56.57	59.26
TraesCS5D01G437400.1	Wheat	cytosol	68.94	59.22
KRG94064	Soybean	mitochondrion	56.31	58.99
CDY71585	Canola	cytosol	30.05	58.91
KRG94047	Soybean	cytosol, mitochondrion, plastid	42.68	58.08
KRH06645	Soybean	cytosol	57.07	57.07
KRG95474	Soybean	plastid	57.83	55.85
KRG94053	Soybean	cytosol	26.26	55.62
KRG94052	Soybean	cytosol	26.26	55.62
KRH67156	Soybean	plastid	57.58	55.61
CDY16586	Canola	cytosol	24.24	55.17
KRG94058	Soybean	mitochondrion	51.52	54.26
KRH71465	Soybean	plastid	56.31	54.13
KRH31976	Soybean	plastid	55.81	53.51
KRH31032	Soybean	nucleus	56.06	53.49
KRG97837	Soybean	cytosol	55.56	53.14
KRH06646	Soybean	cytosol	35.61	46.23

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100806769	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	EMBL:ACUP02001276
InterPro:BPM_C	InterPro:BTB/POZ_dom	EnsemblPlantsGene:GLYMA_02G272800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:K7KB30	EnsemblPlants:KRH73429	ProteinID:KRH73429
ProteinID:KRH73429.1	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411
PANTHER:PTHR24411:SF53	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695
InterPro:TRAF-like	UniParc:UPI0001BA8D68	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:45649792..45654399

Molecular Weight (calculated)

43500.9 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.152

Length

396 amino acids

Sequence
(BLAST)

001: MAGAALSPPT SSKSVTQTVN GSHKFVIEGY SLAKGMGVGK HIASDVFTVG GFHWAIYFYP DGKNPEDNSA YVSVFIALAS EGTDVRALFE LTLLDQSGQG
101: KHKVHSHFDR SLETGPYTLK YKGSMWGYKR FFRRSLLETS EFLKNDCLKI NCTVGVVVSA IDCPQLHSIN IPESDIGSHF GALLDNMEGS DITFDVAGDK
201: FPAHKLVLAA RSPEFRSKFF NGLDEEKNEI IVTDLEPKVF KAMLHFIYKD TLTEEVDTVS STTTSDFPVS EILTAKLLAA ADKYDLGRLR LMCESRLCKD
301: ICVNSVANIL TLADHCHATE LKAVCLKFAA QNLAAVMRSD GFEHMKEKGP WLQSEILKTI AGCEGDGCSA VEKSQSVWGQ LSDGGDMNGR RVRQRI

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.