CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94272
KRG94968
KRG95533
KRG97837
KRH03892
KRH14738
KRH31032
KRH37416
KRH37914
KRH53314
KRH57174
KRH57710
KRH63672
KRH64603
KRH64921
KRH67208
KRH73429
KRH74227
KRH74232
KRH77116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	KRH37416	AT1G64280.1	19490895
AT1G26830.1	KRG94272	AT2G26990.1	12615944
AT1G26830.1	KRG94968	AT2G26990.1	12615944
AT1G26830.1	KRH57710	AT2G26990.1	12615944
AT1G26830.1	KRH64921	AT2G26990.1	12615944
AT1G26830.1	KRG97837	AT2G39760.1	15618422
AT1G26830.1	KRH31032	AT2G39760.1	15618422
AT1G26830.1	KRG97837	AT2G39760.1	15659098
AT1G26830.1	KRH31032	AT2G39760.1	15659098
AT1G26830.1	KRG97837	AT2G39760.1	15772280
AT1G26830.1	KRH31032	AT2G39760.1	15772280
AT1G26830.1	KRH14738	AT3G43700.1	15772280
AT1G26830.1	KRH73429	AT3G43700.1	15772280
AT1G26830.1	KRH03892	AT3G48360.1	15772280
AT1G26830.1	KRH37914	AT3G48360.1	15772280
AT1G26830.1	KRH57174	AT3G48360.1	15772280
AT1G26830.1	KRH63672	AT3G48360.1	15772280
AT1G26830.1	KRH74227	AT4G07670.1	15749712
AT1G26830.1	KRH74232	AT4G07670.1	15749712
AT1G26830.1	KRH53314	AT4G08455.1	15749712
AT1G26830.1	KRH64603	AT4G08455.1	15749712
AT1G26830.1	KRH77116	AT4G37610.1	15772280
AT1G26830.1	KRG95533	AT5G13060.1	15659098
AT1G26830.1	KRH67208	AT5G13060.1	15659098
AT1G26830.1	KRH03892	AT5G63160.1	15772280
AT1G26830.1	KRH37914	AT5G63160.1	15772280
AT1G26830.1	KRH57174	AT5G63160.1	15772280
AT1G26830.1	KRH63672	AT5G63160.1	15772280
AT1G69670.1	KRG97837	AT2G39760.1	15618422
AT1G69670.1	KRH31032	AT2G39760.1	15618422
AT1G69670.1	KRG97837	AT2G39760.1	15659098
AT1G69670.1	KRH31032	AT2G39760.1	15659098
AT1G69670.1	KRH74227	AT4G07670.1	15749712
AT1G69670.1	KRH74232	AT4G07670.1	15749712
AT1G69670.1	KRH53314	AT4G08455.1	15749712
AT1G69670.1	KRH64603	AT4G08455.1	15749712
AT1G69670.1	KRG95533	AT5G13060.1	15659098
AT1G69670.1	KRH67208	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45896	Soybean	cytosol	98.22	98.22
VIT_01s0026g02230.t01	Wine grape	cytosol	85.66	85.54
PGSC0003DMT400016765	Potato	cytosol	85.52	85.29
Solyc01g010820.2.1	Tomato	cytosol	85.52	85.29
AT1G26830.1	Thale cress	cytosol	82.51	82.51
CDY16196	Canola	cytosol	82.1	82.1
CDY50732	Canola	cytosol	82.1	82.1
Bra016291.1-P	Field mustard	cytosol	81.97	81.97
CDY45004	Canola	cytosol	81.97	81.97
Bra024680.1-P	Field mustard	cytosol	81.83	81.83
CDY46437	Canola	cytosol	81.83	81.83
KRH70713	Soybean	cytosol	81.01	81.57
GSMUA_Achr8P16990_001	Banana	cytosol	78.42	81.07
AT1G69670.1	Thale cress	cytosol	81.01	81.01
GSMUA_Achr7P18000_001	Banana	cytosol	77.73	80.37
KRG93520	Soybean	cytosol	80.46	80.35
KRH18483	Soybean	cytosol	80.19	80.08
GSMUA_AchrUn_...	Banana	cytosol	77.32	79.94
EES05529	Sorghum	cytosol	80.05	79.62
Os02t0746000-01	Rice	cytosol	79.78	79.35
Zm00001d018043_P001	Maize	cytosol	79.37	78.94
TraesCS6D01G285800.1	Wheat	cytosol	79.23	78.8
TraesCS6B01G335200.1	Wheat	cytosol	79.23	78.8
TraesCS6A01G306600.1	Wheat	cytosol	79.1	78.67
HORVU6Hr1G075720.2	Barley	cytosol	78.28	76.81
GSMUA_AchrUn_...	Banana	cytosol	62.02	76.3
KRH21073	Soybean	cytosol	18.58	47.55
KRH42547	Soybean	cytosol	41.39	39.4
KRH58640	Soybean	cytosol	41.39	39.1
KRH11182	Soybean	cytosol, plastid	40.85	37.94
KRG96405	Soybean	cytosol	35.11	34.82
KRH68142	Soybean	cytosol	35.25	34.82
KRH12127	Soybean	cytosol	34.43	33.87
KRH37131	Soybean	cytosol, nucleus	34.43	33.87
KRH02236	Soybean	cytosol, nucleus	34.29	33.74
KRH50876	Soybean	endoplasmic reticulum	34.15	33.6
KRH15695	Soybean	cytosol	15.3	30.68
KRH21072	Soybean	plastid	20.22	30.64

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100795098	MapMan:19.2.2.8.2.1	EMBL:ACUP02010963
ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlantsGene:GLYMA_18G120300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	UniProt:I1N157	InterPro:IPR016158	InterPro:IPR036388
EnsemblPlants:KRG99095	ProteinID:KRG99095	ProteinID:KRG99095.1	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniParc:UPI000233E6E2	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:15012190..15016274

Molecular Weight (calculated)

85307.5 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.594

Length

732 amino acids

Sequence
(BLAST)

001: MSNQKKRNFQ IEAFKHRVLM DPKYADKTWE ILKHAIHEIY NHNASGLSFE ELYRNAYNMV LHKFGEKLYS GLVATMTGHL KDIAQSVEAA QGGSFLEELN
101: RKWNDHNKAL QMIRDILMYM DRTYIPSTQK TPVHELGLNL WKENVIYSSQ IRTRLLNTLL ELVHSERTGE VIDRGIMRNI TKMLMDLGPS VYGQEFETHF
201: LQVSAEFYRV ESQKFIECCD CGDYLKKAER RLNEEMERVS HYLDSRTEKK ITNVVEKEMI ENHMLRLIHM ENSGLVHMLC DDKYEDLSRM YNLFRRVTDG
301: LSKIREVMTS HMRESGKQLV TDPERLKDPV EYVQRLLDEK DKYDKIINLA FVNDKSFQNA LNSSFEYFIN LNPRSPEFIS LFVDDKLRKG LKGVSEDDVE
401: VTLDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SQDTMQGFYG CHPELSDGPT LTVQVLTTGS
501: WPTQSSVTCN LPAEMSALCE KFRSFYLGTH TGRRLSWQTN MGTADLKATF GKGQKHELNV STYQMCVLML FNNADRLGYK EIEQATEIPA SDLKRCLQSL
601: ALVKGRNVLR KEPMGKDIGD DDAFYVNDKF SSKLYKVKIG TVVAQKESEP EKQETRQRVE EDRKPQIEAA IVRILKSRKQ LDHNNLIAEV TKQLQSRFLA
701: NPTEVKKRIE SLIERDFLER DDSDRRLYRY LA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.