CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99095
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	KRG99095	AT1G26830.1	15749712
AT4G08455.1	KRH45896	AT1G26830.1	15749712
AT4G08455.1	KRH70713	AT1G26830.1	15749712
AT4G08455.1	KRG99095	AT1G69670.1	15749712
AT4G08455.1	KRH45896	AT1G69670.1	15749712
AT4G08455.1	KRH70713	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64603	Soybean	cytosol	85.0	85.66
CDY34003	Canola	nucleus	36.54	54.91
VIT_18s0001g01590.t01	Wine grape	cytosol	53.85	53.03
GSMUA_Achr8P32570_001	Banana	cytosol	49.62	52.23
CDX83137	Canola	cytosol	53.46	52.06
Os07t0258700-01	Rice	cytosol	48.08	50.81
OQU88783	Sorghum	cytosol	49.62	50.39
Solyc02g032510.2.1	Tomato	cytosol	51.92	48.39
TraesCS6A01G046100.1	Wheat	cytosol	27.31	47.97
TraesCS6B01G062000.1	Wheat	cytosol	46.54	47.83
AT4G08455.1	Thale cress	cytosol	49.62	47.78
Zm00001d019328_P003	Maize	cytosol	48.85	47.39
TraesCS6A01G045900.1	Wheat	cytosol	45.77	46.3
TraesCS6D01G053100.1	Wheat	cytosol	45.77	46.3
HORVU6Hr1G009330.1	Barley	cytosol	46.15	45.11
CDY34002	Canola	cytosol	10.77	39.44
KRH31216	Soybean	cytosol, plastid	19.23	18.59
KRG97659	Soybean	cytosol, plastid	19.23	18.59

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100794118	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A0R0JJD7	EMBL:ACUP02003458
InterPro:BTB/POZ_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G118200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	EnsemblPlants:KRH53314	ProteinID:KRH53314
ProteinID:KRH53314.1	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF131	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI00023398B0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:9627035..9629914

Molecular Weight (calculated)

29489.0 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.346

Length

260 amino acids

Sequence
(BLAST)

001: MVRNRRRMPP RRCTASMGSS NGSESDASDL VMRCLSCEEE YDMDDSGTCR ECYQEANEAE EELRREIEEL KSKVSFLTLP YPNLNASTAD IILVPVDDSD
101: AVPIPAHKHL LVSRSPVFKA MLENDMAERR SGTIKISDIS YDTLSAFVNY LYTAEASLDN ELACNLLVLG EKYQVKHLKT YCEKYLIAKM NWNKAISNYA
201: FAYQYNCKQL RSASLAVILD NMDLLTQNEC YAELVDTNPR LVVEIYETYI GKQLNTAGAF

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.