Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08455.1 | CDY16196 | AT1G26830.1 | 15749712 |
| AT4G08455.1 | CDY45004 | AT1G26830.1 | 15749712 |
| AT4G08455.1 | CDY46437 | AT1G26830.1 | 15749712 |
| AT4G08455.1 | CDY50732 | AT1G26830.1 | 15749712 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83137 | Canola | cytosol | 89.02 | 57.68 |
| AT4G08455.1 | Thale cress | cytosol | 83.81 | 53.7 |
| VIT_18s0001g01590.t01 | Wine grape | cytosol | 64.74 | 42.42 |
| GSMUA_Achr8P32570_001 | Banana | cytosol | 57.8 | 40.49 |
| Os07t0258700-01 | Rice | cytosol | 55.49 | 39.02 |
| Solyc02g032510.2.1 | Tomato | cytosol | 58.96 | 36.56 |
| KRH53314 | Soybean | cytosol, mitochondrion | 54.91 | 36.54 |
| OQU88783 | Sorghum | cytosol | 53.76 | 36.33 |
| KRH64603 | Soybean | cytosol | 53.76 | 36.05 |
| TraesCS6B01G062000.1 | Wheat | cytosol | 51.45 | 35.18 |
| TraesCS6D01G053100.1 | Wheat | cytosol | 51.45 | 34.63 |
| TraesCS6A01G045900.1 | Wheat | cytosol | 51.45 | 34.63 |
| Zm00001d019328_P003 | Maize | cytosol | 53.18 | 34.33 |
| HORVU6Hr1G009330.1 | Barley | cytosol | 52.02 | 33.83 |
| TraesCS6A01G046100.1 | Wheat | cytosol | 20.81 | 24.32 |
| CDX97765 | Canola | cytosol | 16.18 | 23.73 |
| CDY24906 | Canola | cytosol | 14.45 | 18.8 |
| CDY51160 | Canola | cytosol | 17.34 | 14.78 |
| CDY07220 | Canola | cytosol | 16.76 | 14.36 |
| CDX90048 | Canola | cytosol | 17.34 | 14.35 |
| CDX79987 | Canola | cytosol | 16.18 | 14.07 |
| CDY23907 | Canola | cytosol | 16.18 | 14.0 |
| CDY31600 | Canola | cytosol | 16.18 | 12.96 |
| CDY08283 | Canola | cytosol | 16.18 | 12.9 |
| CDY27231 | Canola | cytosol | 20.81 | 12.72 |
| CDY24905 | Canola | cytosol | 15.03 | 12.44 |
| CDX72156 | Canola | cytosol | 20.23 | 12.37 |
| CDY07606 | Canola | cytosol | 14.45 | 11.96 |
| CDY23905 | Canola | cytosol | 13.87 | 11.88 |
| CDX79986 | Canola | cytosol | 13.29 | 11.73 |
| CDY07607 | Canola | cytosol | 15.03 | 11.56 |
| CDY24907 | Canola | cytosol | 14.45 | 10.37 |
| CDY52933 | Canola | cytosol | 16.76 | 9.83 |
| CDY32004 | Canola | cytosol | 10.98 | 9.55 |
| CDY19060 | Canola | mitochondrion | 6.94 | 7.02 |
| CDY32006 | Canola | nucleus | 9.25 | 6.93 |
| CDX67639 | Canola | cytosol | 13.87 | 4.68 |
| CDY34002 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY34003 | EnsemblPlantsGene:GSBRNA2T00055858001 | Gene3D:3.30.710.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | ncoils:Coil | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF131 |
| PFAM:PF00651 | PFscan:PS50097 | ProteinID:CDY34003 | ProteinID:CDY34003.1 | SEG:seg | SMART:SM00225 |
| SUPFAM:SSF54695 | UniParc:UPI0004EE6889 | UniProt:A0A078HB06 | MapMan:35.1 | : | : |
Description
BnaC03g28120DBnaC03g28120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB06]
Coordinates
chrLK032326:-:17975..19106
Molecular Weight (calculated)
19407.6 Da
IEP (calculated)
4.400
GRAVY (calculated)
-0.468
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRTDHRCVI QSESSESGSE SDSDTSMRCI SCREEYLPRD AGTCKECYVE AGETEEELKR EIEDLKAKVT FLRLSSSLDH GNSSSRSFTD VVLIASEDSA
101: SSPPVPAHKA LLVSRSPVFR AMLENEMEES RSGTIKISDI SYDTLRTFVY YLYTAEACLD EQMACDLLVM SEK
101: SSPPVPAHKA LLVSRSPVFR AMLENEMEES RSGTIKISDI SYDTLRTFVY YLYTAEACLD EQMACDLLVM SEK
001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
Arabidopsis Description
BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.