CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24906	Canola	cytosol	30.15	45.11
CDY19060	Canola	mitochondrion	33.67	39.18
CDX97765	Canola	cytosol	23.12	38.98
CDY24905	Canola	cytosol	40.7	38.76
CDY07606	Canola	cytosol	40.2	38.28
CDX79986	Canola	cytosol	36.68	37.24
CDY23907	Canola	cytosol	37.19	37.0
CDY23905	Canola	cytosol	37.19	36.63
CDX79987	Canola	cytosol	36.18	36.18
CDY07607	Canola	cytosol	39.7	35.11
CDX67639	Canola	cytosol	90.45	35.09
Bra003233.1-P	Field mustard	cytosol	90.45	35.09
CDY31600	Canola	cytosol	37.69	34.72
CDY08283	Canola	cytosol	37.69	34.56
CDY24907	Canola	cytosol	40.2	33.2
CDX90048	Canola	cytosol	33.67	32.06
CDY07220	Canola	cytosol	26.63	26.24
CDY51160	Canola	cytosol	25.63	25.12
CDY27231	Canola	cytosol	29.65	20.85
CDX72156	Canola	cytosol	29.65	20.85
CDY52933	Canola	cytosol	30.65	20.68
Zm00001d036840_P001	Maize	cytosol	27.64	18.97
GSMUA_Achr5P29570_001	Banana	cytosol	25.63	18.15
EES09114	Sorghum	cytosol	25.13	18.05
HORVU4Hr1G022110.3	Barley	cytosol	25.63	17.89
TraesCS4A01G196800.2	Wheat	cytosol	25.63	17.83
TraesCS4D01G116200.2	Wheat	cytosol	25.63	17.83
Os11t0111900-01	Rice	cytosol	24.62	17.82
Os12t0111500-02	Rice	cytosol	24.62	17.82
TraesCS4B01G118500.1	Wheat	cytosol	25.13	17.48
CDY34002	Canola	cytosol	6.03	16.9
CDX83137	Canola	cytosol	19.6	14.61
CDY32006	Canola	nucleus	13.07	11.26
CDY34003	Canola	nucleus	9.55	10.98

Protein Annotations

EnsemblPlants:CDY32004	EnsemblPlantsGene:GSBRNA2T00050824001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	PFAM:PF00651
PFscan:PS50097	ProteinID:CDY32004	ProteinID:CDY32004.1	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0004EDF0AB
UniProt:A0A078H3L7	MapMan:35.1	:	:	:	:

Description

BnaC06g15820DBnaC06g15820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3L7]

Coordinates

chrLK032284:-:76750..77431

Molecular Weight (calculated)

23177.8 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.414

Length

199 amino acids

Sequence
(BLAST)

001: MADHQRNMDL FHDGLAKIFT EQWHPDVLCL AGEDDHEDPI PANKVILGAR SDELRELFDG DGKEKETIIL YGMNHEALEV FIEFMYVGNS IQYSEKLKKH
101: ARSLYFAANL YSIPLLRDLC RYQLMSSLNI GNALDILEIS KDDPREKTLH DEARCYVIRH MKEIAFTREF NSFVKRNTSL TVELIRVLAI RGDRTYPKR

Best Arabidopsis Sequence Match ( AT1G01640.1 )
(BLAST)

001: MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
101: YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG
201: NTRPRIW

Arabidopsis Description

BTB/POZ domain-containing protein At1g01640 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.