CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90048
CDX90932
CDY16196
CDY18013
CDY21896
CDY22060
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01640.1	CDX90048	AT1G01640.1	21798944
AT1G01640.1	CDY16196	AT1G26830.1	15772280
AT1G01640.1	CDY45004	AT1G26830.1	15772280
AT1G01640.1	CDY46437	AT1G26830.1	15772280
AT1G01640.1	CDY50732	AT1G26830.1	15772280
AT1G01640.1	CDX90932	AT4G02570.1	15659098
AT1G01640.1	CDY18013	AT4G02570.1	15659098
AT1G01640.1	CDY21896	AT4G02570.1	15659098
AT1G01640.1	CDY22060	AT4G02570.1	15659098
AT1G01640.1	CDX90932	AT4G02570.1	21798944
AT1G01640.1	CDY18013	AT4G02570.1	21798944
AT1G01640.1	CDY21896	AT4G02570.1	21798944
AT1G01640.1	CDY22060	AT4G02570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033246.1-P	Field mustard	cytosol	89.0	89.0
AT1G01640.1	Thale cress	cytosol	75.6	76.33
CDY51160	Canola	cytosol	45.93	47.29
CDY07220	Canola	cytosol	45.45	47.03
CDX97765	Canola	cytosol	23.92	42.37
CDY24906	Canola	cytosol	26.79	42.11
CDY07606	Canola	cytosol	37.32	37.32
CDY24905	Canola	cytosol	37.32	37.32
CDX79987	Canola	cytosol	33.97	35.68
CDY08283	Canola	cytosol	36.84	35.48
CDY23907	Canola	cytosol	33.49	35.0
CDY23905	Canola	cytosol	33.01	34.16
CDX79986	Canola	cytosol	31.58	33.67
CDY32004	Canola	cytosol	32.06	33.67
CDY07607	Canola	cytosol	35.41	32.89
CDY31600	Canola	cytosol	33.97	32.87
CDY24907	Canola	cytosol	36.36	31.54
TraesCS4D01G116200.2	Wheat	cytosol	42.58	31.12
CDY27231	Canola	cytosol	42.11	31.1
CDX72156	Canola	cytosol	42.11	31.1
EES09114	Sorghum	cytosol	41.15	31.05
Zm00001d036840_P001	Maize	cytosol	43.06	31.03
CDY19060	Canola	mitochondrion	25.36	30.99
GSMUA_Achr5P29570_001	Banana	cytosol	41.63	30.96
Os12t0111500-02	Rice	cytosol	40.67	30.91
HORVU4Hr1G022110.3	Barley	cytosol	42.11	30.88
TraesCS4A01G196800.2	Wheat	cytosol	42.11	30.77
TraesCS4B01G118500.1	Wheat	cytosol	42.11	30.77
Os11t0111900-01	Rice	cytosol	40.19	30.55
CDY34002	Canola	cytosol	7.66	22.54
CDY32006	Canola	nucleus	24.88	22.51
CDY52933	Canola	cytosol	31.1	22.03
CDX83137	Canola	cytosol	24.88	19.48
CDY34003	Canola	nucleus	14.35	17.34
CDX67639	Canola	cytosol	33.97	13.84

Protein Annotations

Gene3D:1.25.40.420	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlants:CDX90048	ProteinID:CDX90048
ProteinID:CDX90048.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00150551001	InterPro:IPR000210
PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF54695	UniParc:UPI0004EF1C3D	:	:	:	:

Description

BnaA10g00340D

Coordinates

chrLK031861:-:1420159..1421265

Molecular Weight (calculated)

23404.0 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.186

Length

209 amino acids

Sequence
(BLAST)

001: MSEAAAQKAA FLGGLVVSFK EQMHTDVLVH PGDQSPPIPT HKAILSARSK VFRNMLDSDE CKASAEESIT LPDLNHDELH SLLEFLYSGN LIAPYNHYRA
101: LYLAADKYDI AYLQDVCRDH FIASLTSRNV LDILELASIP SDTILKAAAI NLVVKHMEDV VVPMKYETFV QRNPNLGVEI TRAFLREIKA QSKDSRSASS
201: NHRPHSRIY

Best Arabidopsis Sequence Match ( AT1G01640.1 )
(BLAST)

001: MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
101: YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG
201: NTRPRIW

Arabidopsis Description

BTB/POZ domain-containing protein At1g01640 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.