CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24906	Canola	cytosol	48.96	88.72
CDY07607	Canola	cytosol	77.18	82.67
CDY24905	Canola	cytosol	69.71	80.38
CDY07606	Canola	cytosol	67.22	77.51
AT2G40450.1	Thale cress	cytosol	59.34	68.42
CDX97765	Canola	cytosol	29.46	60.17
CDY08283	Canola	cytosol	51.87	57.6
CDY23907	Canola	cytosol	46.47	56.0
CDX79987	Canola	cytosol	46.06	55.78
CDY31600	Canola	cytosol	48.96	54.63
CDY23905	Canola	cytosol	44.81	53.47
CDX79986	Canola	cytosol	42.74	52.55
CDY19060	Canola	mitochondrion	34.02	47.95
CDY32004	Canola	cytosol	33.2	40.2
CDX90048	Canola	cytosol	31.54	36.36
CDY07220	Canola	cytosol	29.05	34.65
CDY51160	Canola	cytosol	29.05	34.48
GSMUA_Achr5P29570_001	Banana	cytosol	28.63	24.56
CDY27231	Canola	cytosol	28.22	24.03
CDX72156	Canola	cytosol	28.22	24.03
CDY34002	Canola	cytosol	6.64	22.54
TraesCS4D01G116200.2	Wheat	cytosol	26.56	22.38
TraesCS4A01G196800.2	Wheat	cytosol	26.14	22.03
CDY52933	Canola	cytosol	26.56	21.69
EES09114	Sorghum	cytosol	24.48	21.3
HORVU4Hr1G022110.3	Barley	cytosol	24.9	21.05
TraesCS4B01G118500.1	Wheat	cytosol	24.9	20.98
Os11t0111900-01	Rice	cytosol	23.65	20.73
Os12t0111500-02	Rice	cytosol	23.65	20.73
Zm00001d036840_P001	Maize	cytosol	24.07	20.0
CDX83137	Canola	cytosol	21.58	19.48
CDX67639	Canola	cytosol	34.85	16.37
CDY34003	Canola	nucleus	10.37	14.45
CDY32006	Canola	nucleus	13.69	14.29

Protein Annotations

EnsemblPlants:CDY24907	EnsemblPlantsGene:GSBRNA2T00028691001	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	ProteinID:CDY24907	ProteinID:CDY24907.1	SEG:seg	SMART:SM00225
SUPFAM:SSF54695	UniParc:UPI0004EEB54C	UniProt:A0A078GI81	MapMan:35.1	:	:

Description

BnaC03g22650DBnaC03g22650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI81]

Coordinates

chrLK032166:+:78178..79489

Molecular Weight (calculated)

26823.6 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.072

Length

241 amino acids

Sequence
(BLAST)

001: MATQNNKEIF LSGLKKLFKE QWQPDVLLKA GNSDKGATIS AHKLVLASRS VVLKKIMESD EFKASSKLET VTFSEMKHEE LEALVEFMYC VDGCICLESL
101: KKHVGSLYLA ADKYDIPHLR DLCRKHLISS LNSSNALNTF ELAQIPFDKA LNDAAFTTIK NNISTIANSA EFKLFVVNNP YLSVEIMKAF LVQPNNYCCG
201: YCVKTIPFSE RLQMVLPKKG GLSPLLGRET NACSGQPSQL C

Best Arabidopsis Sequence Match ( AT2G40450.1 )
(BLAST)

001: MATQSNKEAF LGGFKKLLNE QWQADVRLKA GDSDETTSIF AHKLVLVARS EVFKKILESD EFKASSKQME TVTLSEMKHE ELEAFVEFIY RVDGSICSAS
101: LKKHARSLFH AADKYEIPHL RDLCRNELIS SLNSSNALSI LELAQIPFDK ALNDPAFTTI ITNISTIASG DEFKLFVANH PNLAVDIMKA SITRLSTSRK
201: ICGYCNRYY

Arabidopsis Description

Putative BTB/POZ domain-containing protein At2g40450 [Source:UniProtKB/Swiss-Prot;Acc:O22890]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.