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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G56230.1 Thale cress cytosol 69.26 56.74
Bra007229.1-P Field mustard cytosol 67.53 55.12
CDY27231 Canola cytosol 67.53 55.12
CDX72156 Canola cytosol 66.67 54.42
VIT_13s0067g02290.t01 Wine grape cytosol, plastid 39.83 34.07
Solyc06g050860.2.1 Tomato cytosol 38.96 32.26
KRH31216 Soybean cytosol, plastid 35.06 30.11
KRG97659 Soybean cytosol, plastid 34.2 29.37
PGSC0003DMT400071906 Potato cytosol 25.54 29.35
Os11t0111900-01 Rice cytosol 30.3 25.45
Os12t0111500-02 Rice cytosol 30.3 25.45
CDX90048 Canola cytosol 22.51 24.88
EES09114 Sorghum cytosol 29.0 24.19
TraesCS4B01G118500.1 Wheat cytosol 29.87 24.13
GSMUA_Achr5P29570_001 Banana cytosol 29.0 23.84
HORVU4Hr1G022110.3 Barley cytosol 29.0 23.51
TraesCS4A01G196800.2 Wheat cytosol 29.0 23.43
PGSC0003DMT400097598 Potato cytosol 19.48 23.2
TraesCS4D01G116200.2 Wheat cytosol 28.57 23.08
Solyc05g052290.1.1 Tomato cytosol 25.54 22.18
Zm00001d036840_P001 Maize cytosol 26.84 21.38
CDY23907 Canola cytosol 17.32 20.0
CDY34002 Canola cytosol 6.06 19.72
CDY51160 Canola cytosol 17.32 19.7
CDX79987 Canola cytosol 16.88 19.6
CDY07220 Canola cytosol 16.88 19.31
CDX97765 Canola cytosol 9.09 17.8
CDY19060 Canola mitochondrion 12.55 16.96
CDY31600 Canola cytosol 14.72 15.74
CDY23905 Canola cytosol 13.42 15.35
CDY08283 Canola cytosol 14.29 15.21
CDY07607 Canola cytosol 14.72 15.11
CDX67639 Canola cytosol 33.33 15.01
CDY24905 Canola cytosol 12.55 13.88
CDY07606 Canola cytosol 12.55 13.88
CDY24907 Canola cytosol 14.29 13.69
CDY24906 Canola cytosol 7.79 13.53
CDX79986 Canola cytosol 11.26 13.27
CDY32004 Canola cytosol 11.26 13.07
CDX83137 Canola cytosol 12.99 11.24
CDY34003 Canola nucleus 6.93 9.25
CDY52933 Canola cytosol 11.69 9.15
Protein Annotations
EnsemblPlants:CDY32006EnsemblPlantsGene:GSBRNA2T00050826001Gene3D:1.25.40.420GO:A0A078H2H7GO:GO:0005575GO:GO:0016020
GO:GO:0016021PANTHER:PTHR24413PANTHER:PTHR24413:SF164ProteinID:CDY32006ProteinID:CDY32006.1SEG:seg
TMHMM:TMhelixUniParc:UPI0004EF222FUniProt:A0A078H2H7MapMan:35.1::
Description
BnaC06g15840DBnaC06g15840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2H7]
Coordinates
chrLK032284:-:80987..82237
Molecular Weight (calculated)
26461.0 Da
IEP (calculated)
7.788
GRAVY (calculated)
-0.272
Length
231 amino acids
Sequence
(BLAST)
001: MDCSICTTKP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDHEKLTV KSAVNNGSSL SSSPLFSRES QPFEKVIKWM ENMKETEDKQ KKRIVFVSSF
101: VLGFKEGFML IFFYTPAMMD LRSMHIELCW LQNLFKNILD SDKYKTAPEY AITLQELNSE ELQALFVLDV LDVSDLGSSK RLKEAAIGFV VQNMDDIIVL
201: DKYEAFSQKN QHLCVQITRA FLTETRSKRR D
Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)
001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD
Arabidopsis Description
BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.