Factsheet for PGSC0003DMT400097598

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052290.1.1	Tomato	cytosol	88.66	64.66
PGSC0003DMT400071906	Potato	cytosol	62.37	60.2
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	55.67	40.0
KRH31216	Soybean	cytosol, plastid	51.55	37.17
KRG97659	Soybean	cytosol, plastid	50.0	36.06
Bra007229.1-P	Field mustard	cytosol	47.42	32.51
CDY27231	Canola	cytosol	47.42	32.51
CDX72156	Canola	cytosol	47.42	32.51
GSMUA_Achr5P29570_001	Banana	cytosol	46.39	32.03
AT3G56230.1	Thale cress	cytosol	45.36	31.21
Os12t0111500-02	Rice	cytosol	37.63	26.55
EES09114	Sorghum	cytosol	37.11	25.99
Os11t0111900-01	Rice	cytosol	36.6	25.82
TraesCS4D01G116200.2	Wheat	cytosol	36.6	24.83
TraesCS4A01G196800.2	Wheat	cytosol	36.08	24.48
TraesCS4B01G118500.1	Wheat	cytosol	35.57	24.13
HORVU4Hr1G022110.3	Barley	cytosol	35.05	23.86
Zm00001d036840_P001	Maize	cytosol	35.57	23.79
CDY32006	Canola	nucleus	23.2	19.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400097598	EnsemblPlantsGene:PGSC0003DMG400047169	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	PGSC:PGSC0003DMG400047169	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI000296042F
UniProt:M1E0Z6	MapMan:35.1	:	:	:	:

Description

BTB/POZ domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400047169]

Coordinates

chr5:+:47556021..47557264

Molecular Weight (calculated)

21812.7 Da

IEP (calculated)

9.027

GRAVY (calculated)

-0.078

Length

194 amino acids

Sequence
(BLAST)

001: MKEKVNYLSS CLNAFKGQVH KDILVKPGNN GPSIAVHKSL LSANSVIFKF MLDSDACKAP PGHTITLAEL SYVELHALLE FLYRGELPKE KLEKHVYTLS
101: IAADKYEIKL LQKYCEHHML GSLNTSNALE LLEISETYKS YSHLKVEAMI FIIKNVEGIV FTPKFDAFAV ENPHLAVQIT RASVVTNKNK KHKV

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.