Factsheet for Bra007229.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27231	Canola	cytosol	100.0	100.0
CDX72156	Canola	cytosol	98.59	98.59
AT3G56230.1	Thale cress	cytosol	83.39	83.69
CDY32006	Canola	nucleus	55.12	67.53
PGSC0003DMT400071906	Potato	cytosol	40.28	56.72
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	52.65	55.19
Solyc06g050860.2.1	Tomato	cytosol	52.65	53.41
KRH31216	Soybean	cytosol, plastid	47.35	49.81
KRG97659	Soybean	cytosol, plastid	46.64	49.07
PGSC0003DMT400097598	Potato	cytosol	32.51	47.42
Solyc05g052290.1.1	Tomato	cytosol	39.93	42.48
Bra037339.1-P	Field mustard	cytosol	29.33	40.89
Os12t0111500-02	Rice	cytosol	39.58	40.73
Os11t0111900-01	Rice	cytosol	39.58	40.73
GSMUA_Achr5P29570_001	Banana	cytosol	40.28	40.57
TraesCS4B01G118500.1	Wheat	cytosol	39.58	39.16
TraesCS4D01G116200.2	Wheat	cytosol	39.58	39.16
TraesCS4A01G196800.2	Wheat	cytosol	39.22	38.81
EES09114	Sorghum	cytosol	37.81	38.63
Bra033246.1-P	Field mustard	cytosol	28.27	38.28
Zm00001d036840_P001	Maize	cytosol	38.52	37.59
HORVU4Hr1G022110.3	Barley	cytosol	37.46	37.19
Bra004569.1-P	Field mustard	cytosol	25.09	35.32
Bra021691.1-P	Field mustard	cytosol	24.38	34.33
Bra000185.1-P	Field mustard	cytosol	23.67	32.37
Bra004570.1-P	Field mustard	cytosol	23.67	31.6
Bra000186.1-P	Field mustard	cytosol	22.97	31.1
Bra037082.1-P	Field mustard	cytosol, nucleus, plastid	16.96	30.38
Bra017002.1-P	Field mustard	cytosol	20.14	20.14
Bra003233.1-P	Field mustard	cytosol	34.28	18.91
Bra021693.1-P	Field mustard	cytosol	23.32	16.67

Protein Annotations

EnsemblPlants:Bra007229.1	EnsemblPlants:Bra007229.1-P	EnsemblPlantsGene:Bra007229	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413
PANTHER:PTHR24413:SF164	PFAM:PF00651	PFscan:PS50097	SEG:seg	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0002542B7A	UniProt:M4CSN7	MapMan:35.1	:	:	:

Description

AT3G56230 (E=6e-126) | speckle-type POZ protein-related

Coordinates

chrA09:-:28102980..28104252

Molecular Weight (calculated)

32113.4 Da

IEP (calculated)

5.242

GRAVY (calculated)

-0.315

Length

283 amino acids

Sequence
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG ANEDQDHDKS TDKFTVNNCS SLSSSPLFSR EPQPLQKVIK WIKNMKETEE EQKKRIVFLS
101: SFVSGFKEQL HTDILLKPGD DGPHIPAHRA LLASKSEIFK NILDSDDCKT APEYAITLQE LNSEELQALL EFLYTGTLAS DKLEKHVYAL FVAADKYMIH
201: YLQEFCEQYM LSSLEISSVL DVLDVSDLAS SKTLKEAALG FVVRNMDDIV FSDNYEAFSQ KNQHLCVQIT RAFLMEMRSK RRD

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.