Factsheet for Bra033246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra016291.1-P
Bra024680.1-P
Bra033246.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01640.1	Bra033246.1-P	AT1G01640.1	21798944
AT1G01640.1	Bra016291.1-P	AT1G26830.1	15772280
AT1G01640.1	Bra024680.1-P	AT1G26830.1	15772280
AT1G01640.1	Bra000874.1-P	AT4G02570.1	15659098
AT1G01640.1	Bra036257.1-P	AT4G02570.1	15659098
AT1G01640.1	Bra000874.1-P	AT4G02570.1	21798944
AT1G01640.1	Bra036257.1-P	AT4G02570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90048	Canola	cytosol	89.0	89.0
AT1G01640.1	Thale cress	cytosol	67.46	68.12
Bra037339.1-P	Field mustard	cytosol	44.02	45.32
Bra021691.1-P	Field mustard	cytosol	34.93	36.32
Bra037082.1-P	Field mustard	cytosol, nucleus, plastid	25.84	34.18
Bra000186.1-P	Field mustard	cytosol	33.49	33.49
Bra004569.1-P	Field mustard	cytosol	31.1	32.34
Bra000185.1-P	Field mustard	cytosol	30.62	30.92
Bra004570.1-P	Field mustard	cytosol	31.1	30.66
GSMUA_Achr5P29570_001	Banana	cytosol	38.76	28.83
Os12t0111500-02	Rice	cytosol	37.32	28.36
Bra007229.1-P	Field mustard	cytosol	38.28	28.27
HORVU4Hr1G022110.3	Barley	cytosol	38.28	28.07
Os11t0111900-01	Rice	cytosol	36.84	28.0
TraesCS4D01G116200.2	Wheat	cytosol	38.28	27.97
Zm00001d036840_P001	Maize	cytosol	38.76	27.93
EES09114	Sorghum	cytosol	36.84	27.8
TraesCS4A01G196800.2	Wheat	cytosol	37.8	27.62
TraesCS4B01G118500.1	Wheat	cytosol	37.8	27.62
Bra017002.1-P	Field mustard	cytosol	34.45	25.44
Bra021693.1-P	Field mustard	cytosol	33.97	17.93
Bra003233.1-P	Field mustard	cytosol	30.14	12.28

Protein Annotations

Gene3D:1.25.40.420	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra033246	EnsemblPlants:Bra033246.1
EnsemblPlants:Bra033246.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000210	UniProt:M4EWR1	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413
PANTHER:PTHR24413:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	TMHMM:TMhelix	UniParc:UPI000254532B

Description

AT1G01640 (E=2e-068) | speckle-type POZ protein-related

Coordinates

chrA10:-:4700661..4701290

Molecular Weight (calculated)

23692.5 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.082

Length

209 amino acids

Sequence
(BLAST)

001: MHTDVLVHPG DQSPPIPTHK AILVTSLSLL NMIQSALLTF IIYWQSARSK VFRNMLDSDE CKASAEESIT LPDLNHDELH SLLEFLYSGN LIAPYNHYRA
101: LYLAADKYDI AYLQDVCRDH FIASLTSRNV LDILELASIP SDTILKAAAI NLVVKHMEDV VVPMKYETFV QRNPNLGVEI TRAFLREIKA QSKDSRSASC
201: NHRPHSRIY

Best Arabidopsis Sequence Match ( AT1G01640.1 )
(BLAST)

001: MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
101: YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG
201: NTRPRIW

Arabidopsis Description

BTB/POZ domain-containing protein At1g01640 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.