Factsheet for Bra024680.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra000529.1-P
Bra001186.1-P
Bra008860.1-P
Bra011776.1-P
Bra012038.1-P
Bra017053.1-P
Bra017839.1-P
Bra018065.1-P
Bra020764.1-P
Bra023389.1-P
Bra027690.1-P
Bra029235.1-P
Bra030621.1-P
Bra033246.1-P
Bra037082.1-P
Bra038612.1-P
Bra040233.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	Bra033246.1-P	AT1G01640.1	15772280
AT1G26830.1	Bra030621.1-P	AT1G05690.1	15772280
AT1G26830.1	Bra027690.1-P	AT1G64280.1	19490895
AT1G26830.1	Bra000529.1-P	AT2G26990.1	12615944
AT1G26830.1	Bra012038.1-P	AT2G26990.1	12615944
AT1G26830.1	Bra000147.1-P	AT2G39760.1	15618422
AT1G26830.1	Bra017053.1-P	AT2G39760.1	15618422
AT1G26830.1	Bra000147.1-P	AT2G39760.1	15659098
AT1G26830.1	Bra017053.1-P	AT2G39760.1	15659098
AT1G26830.1	Bra000147.1-P	AT2G39760.1	15772280
AT1G26830.1	Bra017053.1-P	AT2G39760.1	15772280
AT1G26830.1	Bra001186.1-P	AT3G06190.1	15772280
AT1G26830.1	Bra020764.1-P	AT3G06190.1	15772280
AT1G26830.1	Bra040233.1-P	AT3G06190.1	15772280
AT1G26830.1	Bra018065.1-P	AT3G48360.1	15772280
AT1G26830.1	Bra011776.1-P	AT4G37610.1	15772280
AT1G26830.1	Bra017839.1-P	AT4G37610.1	15772280
AT1G26830.1	Bra008860.1-P	AT5G13060.1	15659098
AT1G26830.1	Bra023389.1-P	AT5G13060.1	15659098
AT1G26830.1	Bra037082.1-P	AT5G48510.1	15772280
AT1G26830.1	Bra029235.1-P	AT5G63160.1	15772280
AT1G26830.1	Bra038612.1-P	AT5G63160.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16196	Canola	cytosol	99.73	99.73
CDY50732	Canola	cytosol	99.32	99.32
Bra016291.1-P	Field mustard	cytosol	97.13	97.13
AT1G26830.1	Thale cress	cytosol	96.17	96.17
PGSC0003DMT400016765	Potato	cytosol	82.79	82.56
Solyc01g010820.2.1	Tomato	cytosol	82.51	82.29
KRH45896	Soybean	cytosol	81.97	81.97
KRG99095	Soybean	cytosol	81.83	81.83
VIT_01s0026g02230.t01	Wine grape	cytosol	81.69	81.58
GSMUA_Achr8P16990_001	Banana	cytosol	75.96	78.53
EES05529	Sorghum	cytosol	78.83	78.4
GSMUA_AchrUn_...	Banana	cytosol	75.82	78.39
GSMUA_Achr7P18000_001	Banana	cytosol	75.68	78.25
Zm00001d018043_P001	Maize	cytosol	78.28	77.85
TraesCS6D01G285800.1	Wheat	cytosol	77.87	77.45
Os02t0746000-01	Rice	cytosol	77.87	77.45
TraesCS6B01G335200.1	Wheat	cytosol	77.73	77.31
TraesCS6A01G306600.1	Wheat	cytosol	77.73	77.31
HORVU6Hr1G075720.2	Barley	cytosol	77.05	75.6
GSMUA_AchrUn_...	Banana	cytosol	60.52	74.45
KRH70713	Soybean	cytosol	72.54	73.04
Bra025031.1-P	Field mustard	cytosol	40.71	39.21
Bra017569.1-P	Field mustard	plastid	41.12	38.3
Bra022023.1-P	Field mustard	plastid	40.71	37.96
Bra000874.1-P	Field mustard	cytosol	32.79	32.52
Bra032576.1-P	Field mustard	cytosol	32.65	32.38
Bra033362.1-P	Field mustard	cytosol	31.15	31.84
Bra034597.1-P	Field mustard	cytosol	31.69	31.74
Bra018706.1-P	Field mustard	cytosol	28.01	30.37
Bra033363.1-P	Field mustard	cytosol	31.69	29.82
Bra028442.1-P	Field mustard	cytosol	27.87	29.02
Bra032570.1-P	Field mustard	cytosol	23.09	24.28
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	32.51	24.14

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	EnsemblPlantsGene:Bra024680	EnsemblPlants:Bra024680.1
EnsemblPlants:Bra024680.1-P	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388
UniProt:M4E7C5	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF95
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000254281E
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

AT1G26830 (E=0.0) CUL3A, ATCUL3A, ATCUL3, CUL3 | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase

Coordinates

chrA09:+:23546940..23549215

Molecular Weight (calculated)

84955.2 Da

IEP (calculated)

7.981

GRAVY (calculated)

-0.559

Length

732 amino acids

Sequence
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGDKLYT GFIATMTAHL KEKSKLIEAA QGGSFLEELN
101: KKWNEQNKAL EMIRDILMYM DRTYIESTKK PHVHPMGLSL WRDNVVHSPK IHTRLLNTLL DLVHKERTGE VIDRGLVRNV TKMFMDLGES VYQDDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKRAEK RLTEEIDRVG HYLDAKSEDK ITSVVEKEMI ANHMQRLVHM ENSGLVTMLL NDKYEDLGRM YNLFRRVTNG
301: LATVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIISTA FGNDKTFQNA SNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGIADADVE
401: VVLDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AEKSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA PDLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFCVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DNTDRKLYRY LA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.