Factsheet for Bra028442.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67439	Canola	cytosol	98.86	98.86
PGSC0003DMT400013645	Potato	cytosol	7.54	67.95
Bra000874.1-P	Field mustard	cytosol	68.99	65.72
Bra018706.1-P	Field mustard	cytosol	62.59	65.19
Bra032576.1-P	Field mustard	cytosol	56.47	53.79
Bra034597.1-P	Field mustard	cytosol	55.76	53.63
Bra033362.1-P	Field mustard	cytosol	52.92	51.96
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	69.27	49.39
Solyc06g008710.1.1	Tomato	cytosol	50.64	47.91
Bra033363.1-P	Field mustard	cytosol	51.92	46.92
Bra032570.1-P	Field mustard	cytosol	39.12	39.51
Bra016291.1-P	Field mustard	cytosol	29.45	28.28
Bra024680.1-P	Field mustard	cytosol	29.02	27.87
Bra025031.1-P	Field mustard	cytosol	29.16	26.97
Bra017569.1-P	Field mustard	plastid	29.45	26.34
Bra022023.1-P	Field mustard	plastid	29.3	26.24

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	EnsemblPlantsGene:Bra028442	EnsemblPlants:Bra028442.1
EnsemblPlants:Bra028442.1-P	ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158
InterPro:IPR036388	UniProt:M4EI27	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI00025432AC	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT4G02570 (E=3e-164) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding

Coordinates

chrA02:+:339760..341871

Molecular Weight (calculated)

82467.6 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.420

Length

703 amino acids

Sequence
(BLAST)

001: MMARTIDFAQ GWRIMQIGIT KLEKHVEGLP GNSINSEQYI KLYTTVYVMC TQKPPHDHTE KLYNKYCEVL EEYTKSTALP SLRKTYDDEY MLLRVLLERW
101: SIHKKMVRRL SRIFHYLDRY FVYRNSLLSL EEVGLACFVD MVYNTLQRRV REAVIAIVDK EREGDDTDID RALLENIKDI YVEIGMGNMK RYEQDLESFM
201: LEGTASYYSR KASRWIQEYS YFDYIRKSEE CVKKEKKRMS HYLYASSEPE LVKKVEHELF VVYANKLLEK KHSEFREIAG GLEPITNMFK QHVEDTDGQD
301: TAAIRKVIEV HDKYIVYVTK CLENQTIFHK SLKEAFKFFC SKAVSGSSLS AESLATICDR IIILKKWASE ELSDEAIEKV VKFLAYISDD KDLFAEFYKK
401: KLARRLLLNR DASYDHERRI ITKLKQQFGG NFTYKMEGMV TDLTLSRQYQ NSFDEYVASN PAAKPGIDFN VTLLTTSVWP SYKTFDVNLP SEMVKCVEIF
501: KVFYEAKHKR RKLTWLHSLD TCHINGKFDQ KPIDLIVSTH QAAVLLLFNT RDQLNYTDIQ TQLNLSHEDL VWVLHSLSCA KYKILIKEPA TETVSKNDVF
601: EVNSKFTSRM GRVKIPLSHV DERKKVVEYV NNDRRYAIEA SIVRIMKGKK VLGHEQLVSQ CVKQLSGMFK PDVKAIKTRI EELIARDYLE RDKMNPNMFR
701: YLA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.