Factsheet for Solyc06g008710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013645	Potato	cytosol	10.5	100.0
Solyc06g084520.2.1	Tomato	cytosol	70.12	70.41
Solyc09g074680.2.1	Tomato	cytosol	67.29	67.57
Solyc01g067100.2.1	Tomato	cytosol	64.33	64.42
Solyc09g010050.1.1	Tomato	cytosol	62.85	63.54
Solyc01g067210.2.1	Tomato	cytosol	48.18	62.92
CDY72590	Canola	cytosol	7.94	62.77
Solyc01g067140.1.1	Tomato	cytosol	31.76	58.42
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	10.36	57.46
Solyc05g018040.1.1	Tomato	cytosol	19.11	56.57
AT1G43140.1	Thale cress	cytosol	53.7	55.34
CDY51951	Canola	cytosol	54.78	55.22
GSMUA_Achr1P26690_001	Banana	cytosol	55.32	55.17
Bra034597.1-P	Field mustard	cytosol	54.24	55.13
CDY51862	Canola	cytosol	21.4	55.02
CDY32488	Canola	cytosol	54.1	54.47
AT1G02980.1	Thale cress	cytosol	54.24	54.31
Bra032576.1-P	Field mustard	cytosol	53.84	54.2
Bra033362.1-P	Field mustard	cytosol	51.28	53.21
CDX89926	Canola	cytosol	51.41	53.13
Bra018706.1-P	Field mustard	cytosol	46.7	51.41
CDX89925	Canola	cytosol	50.34	51.3
CDX67439	Canola	cytosol	48.32	51.07
CDY11663	Canola	cytosol	47.91	50.64
Bra028442.1-P	Field mustard	cytosol	47.91	50.64
CDX93643	Canola	cytosol	34.19	50.3
Bra033363.1-P	Field mustard	cytosol	50.87	48.59
Solyc01g067270.2.1	Tomato	cytosol	14.8	48.03
CDY51863	Canola	cytosol	24.9	42.82
Bra032570.1-P	Field mustard	cytosol	38.09	40.66
Solyc01g067200.1.1	Tomato	cytosol	9.83	38.02
AT1G59800.1	Thale cress	cytosol	12.92	37.65
VIT_05s0020g01340.t01	Wine grape	mitochondrion	7.67	35.4
Solyc01g067260.2.1	Tomato	plastid	9.69	34.45
CDY37452	Canola	cytosol	5.79	32.82
Solyc06g008080.1.1	Tomato	cytosol	13.46	32.68
Solyc01g099290.2.1	Tomato	cytosol	10.9	30.45
Solyc01g067120.2.1	Tomato	cytosol	6.86	30.36
Solyc02g087900.2.1	Tomato	cytosol	28.4	28.79
Solyc01g010820.2.1	Tomato	cytosol	28.4	28.75
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	29.61	28.03
Solyc02g070460.2.1	Tomato	plastid	29.61	27.43
CDY18137	Canola	cytosol	51.95	26.31

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	InterPro:Cullin_CS	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630
InterPro:IPR016158	InterPro:IPR036388	UniProt:K4C3Q1	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF74788	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc06g008710.1	EnsemblPlants:Solyc06g008710.1.1	UniParc:UPI0002766916	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2615845..2621332

Molecular Weight (calculated)

85772.5 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.392

Length

743 amino acids

Sequence
(BLAST)

001: MEETEEKTIE LEEGMECVQK GLNKLKIIIE GEPESFTSDE YVMLYTKHLM ITLSNCTIST KKQLNITIVL PSLNKKHDEF LLKELEKRWA SHKLMVKWLL
101: KFFRYLDKFF IKRAEVPALN EVGLSCFRDL VYHDVKNRVT DAVIALIDQE REGEKIDRVL LKSVINLYID MGKGRMDYYV NDFEEAMLRD SACHYSRKAS
201: TWIVEDSCPE YMLKRSACKR RRIECLIICT LALRQNFWSN STTNNMNGQQ DYAQKMQNQV LITYTNQLLE KEDSGCRALL KDEKVEDLTR MYSLFHKFPK
301: GIELVAEIFK QHVAAEGMIV VQQAADVANN KIESSGGSHE QDFVKKAFEL HDKYMVYVKG CFADNSIFHK ALKEAFEVFC NKSVAGSSTA ELLASYCDNT
401: LKKGGSEQLS DEVIEDTLEK VVKLVTYISD KDVFAEFYRK KLSRRLLFDR SANEEHERLI LSKLKQQCGG QFTSKMEGMV TDLSLVKDNQ THFQEYISNN
501: TATNPGIDMT VTVLTTGFWP GYKSCDLSLP VEMAKGVESF KEFYQKKTKH RKLTWIFSLG QCNLNGKFEQ KTIELILGTY QAAALLLFNA SDKWSYADIK
601: TELNLADDDL VRVLASVSCA KYKILNKEPS GSTVSSTDHF EFNSQFTDKM RRIRVPLPPV DDRKKMVEEV GKDRRYAIDA CLVRIMKAKK VLTHQQLILE
701: CVEQLSKMFK PDVKAIKKRI EDLITRDYLE RDLENTNTYK YIA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.