Factsheet for Solyc06g084520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061802	Potato	cytosol	99.19	99.86
Solyc09g074680.2.1	Tomato	cytosol	91.08	91.08
Solyc01g067100.2.1	Tomato	cytosol	84.73	84.5
Solyc09g010050.1.1	Tomato	cytosol	78.78	79.32
Solyc01g067210.2.1	Tomato	cytosol	59.05	76.8
CDX91291	Canola	nucleus	12.16	73.77
Solyc06g008710.1.1	Tomato	cytosol	70.41	70.12
Solyc05g018040.1.1	Tomato	cytosol	23.78	70.12
Solyc01g067140.1.1	Tomato	cytosol	36.62	67.08
Solyc01g067270.2.1	Tomato	cytosol	20.27	65.5
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	11.35	62.69
Solyc01g067200.1.1	Tomato	cytosol	14.46	55.73
Solyc01g067260.2.1	Tomato	plastid	15.54	55.02
Solyc06g008080.1.1	Tomato	cytosol	22.3	53.92
Solyc01g067120.2.1	Tomato	cytosol	10.0	44.05
Solyc01g099290.2.1	Tomato	cytosol	14.59	40.6
Solyc02g087900.2.1	Tomato	cytosol	33.65	33.97
Solyc01g010820.2.1	Tomato	cytosol	33.65	33.92
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	33.38	31.46
Solyc02g070460.2.1	Tomato	plastid	33.78	31.17

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	ncoils:Coil	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787
GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388	UniProt:K4CAV7	PFAM:PF00888	PFAM:PF10557
ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884
SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc06g084520.2	EnsemblPlants:Solyc06g084520.2.1	UniParc:UPI000276BBB3
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:49600280..49606870

Molecular Weight (calculated)

86083.4 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.467

Length

740 amino acids

Sequence
(BLAST)

001: MTTSQMKTIE LEEGWNFMQK GITKLKKILE GHPDSFSSEE YMMLYTTIYN MCTQKPPHDY SQQLYEKYKE AFEEYINSTV LSSLREKHDE FMLRELVKRW
101: ANHKLMVRWL SRFFHYLDRY FIARRSLPAL NEVGLTCFRD LVYQELKSKA RDAVIALIDQ EREGEQIDRA LLKNVLGIFV EIGMGEMEFY ENDFEDAMLK
201: DTSAYYSRKA SNWIVEDSCP DYMLKAEECL KKEKDRVSHY LHSSSETKLL EKVQNELLVV YTNQLLEKEH SGCRALLRDD KVEDLSRMYR LFHRIPKGLE
301: PVANMFKQHV TAEGMVLVQQ AEDSASNKAE SSSGSQEQVF VRKVIELHDK YMAYVTDSFA NNSLFHKALK EAFEVFCNKI VAGCSSAELL ASYCDNILKK
401: GGSEKLSDDA IEETLDKVVK LLAYISDKDL FAEFYRKKLS RRLLFDKSAN DDHERLILTK LKQQCGGQFT SKMEGMVTDL TLAKENQSHF QEYLSNNSAA
501: NPGIDLTVTV LTTGFWPSYK SSDLSLPVEM VKCVEVFKEF YQTKTKHRKL TWIYSLGTCN INGKFESKTI ELIVGTYQAA ALLLFNASDR LSYSDIKSQL
601: NLADDDLIRL LQSLSCAKYK ILTKEPSNRT VSSTDHFEFN SKFTDRMRRI RIPLPPVDER KKVVEDVDKD RRYAIDACIV RIMKSRKVLP HQQLVLECVE
701: QLSRMFKPDF KAIKKRIEDL ITRDYLERDK ENPNLFKYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.