Factsheet for PGSC0003DMT400061802

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084520.2.1	Tomato	cytosol	99.86	99.19
PGSC0003DMT400029607	Potato	cytosol	91.43	90.93
PGSC0003DMT400023105	Potato	cytosol	67.21	87.13
VIT_05s0020g01320.t01	Wine grape	cytosol	86.53	85.48
PGSC0003DMT400023111	Potato	cytosol	84.76	84.42
KRH02236	Soybean	cytosol, nucleus	84.9	83.87
KRH50876	Soybean	endoplasmic reticulum	84.76	83.74
KRH37131	Soybean	cytosol, nucleus	84.63	83.6
GSMUA_AchrUn_...	Banana	cytosol	82.58	83.49
PGSC0003DMT400022865	Potato	cytosol	83.4	83.4
KRH12127	Soybean	cytosol	84.22	83.2
GSMUA_Achr1P14740_001	Banana	cytosol	84.08	83.06
GSMUA_Achr7P03700_001	Banana	cytosol	83.81	82.8
PGSC0003DMT400074970	Potato	cytosol	33.33	81.94
PGSC0003DMT400013645	Potato	cytosol	8.57	80.77
TraesCS1B01G118000.1	Wheat	cytosol	81.36	80.38
TraesCS1D01G098500.3	Wheat	cytosol	81.36	80.38
HORVU1Hr1G020400.1	Barley	cytosol	81.36	80.27
TraesCS1A01G090000.1	Wheat	cytosol	81.09	80.11
EES00748	Sorghum	cytosol	80.68	79.7
EES19028	Sorghum	cytosol	80.14	79.17
KRH15695	Soybean	cytosol	39.18	78.9
VIT_07s0104g01590.t01	Wine grape	cytosol	79.46	78.81
TraesCS1A01G089900.1	Wheat	cytosol, golgi	78.91	77.75
TraesCS1D01G098400.2	Wheat	cytosol	78.91	77.75
TraesCS1B01G117900.1	Wheat	cytosol	78.78	77.61
Zm00001d010858_P007	Maize	cytosol	78.91	77.44
HORVU1Hr1G020390.1	Barley	cytosol	78.23	77.08
PGSC0003DMT400038140	Potato	cytosol	23.13	74.89
Zm00001d024855_P007	Maize	cytosol	78.37	74.32
CDX91291	Canola	nucleus	12.24	73.77
PGSC0003DMT400097727	Potato	cytosol	17.14	73.26
PGSC0003DMT400085888	Potato	cytosol	9.66	51.45
PGSC0003DMT400063662	Potato	cytosol	15.51	39.31
PGSC0003DMT400003338	Potato	cytosol	34.01	34.11
PGSC0003DMT400016765	Potato	cytosol	34.01	34.06

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	ncoils:Coil	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M1C817	PFAM:PF00888	PFAM:PF10557
EnsemblPlantsGene:PGSC0003DMG400024045	PGSC:PGSC0003DMG400024045	EnsemblPlants:PGSC0003DMT400061802	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000296CE27	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Cullin 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400024045]

Coordinates

chr6:-:59315293..59322145

Molecular Weight (calculated)

85518.7 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.461

Length

735 amino acids

Sequence
(BLAST)

001: MKTIELEEGW NFMQKGITKL KKILEGHPDS FSSEEYMMLY TTIYNMCTQK PPHDYSQQLY EKYKEAFEEY INSTVLSSLR EKHDEFMLRE LVKRWANHKL
101: MVRWLSRFFH YLDRYFIARR SLPALNEVGL TCFRDLVYQE LKSKARDAVI ALIDQEREGE QIDRALLKNV LGIFVEIGMG EMEFYENDFE DAMLKDTAAY
201: YSRKASNWIV EDSCPDYMLK AEECLKKEKD RVSHYLHSSS ETKLLEKVQN ELLVVYTNQL LEKEHSGCRA LLRDDKVEDL SRMYRLFHRI PKGLEPVANM
301: FKQHVTAEGM VLVQQAEDSA SNKAESSSGS QEQVFVRKVI ELHDKYMAYV TDSFANNSLF HKALKEAFEV FCNKIVAGCS SAELLASYCD NILKKGGSEK
401: LSDDAIEETL DKVVKLLAYI SDKDLFAEFY RKKLSRRLLF DKSANDDHER LILTKLKQQC GGQFTSKMEG MVTDLTLAKE NQSHFQEYLS NNSAANPGID
501: LTVTVLTTGF WPSYKSSDLS LPVEMVKCVE VFKEFYQTKT KHRKLTWIYS LGTCNINGKF ESKTIELIVG TYQAAALLLF NASDRLSYSD IKSQLNLADD
601: DLIRLLQSLS CAKYKILTKE PSNRTVSSTD HFEFNSKFTD RMRRIRIPLP PVDERKKVVE DVDKDRRYAI DACIVRIMKS RKVLPHQQLV LECVEQLSRM
701: FKPDFKAIKK RIEDLITRDY LERDKENPNL FKYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.