Factsheet for PGSC0003DMT400029607

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074680.2.1	Tomato	cytosol	98.38	98.24
PGSC0003DMT400061802	Potato	cytosol	90.93	91.43
PGSC0003DMT400023105	Potato	cytosol	69.69	90.83
PGSC0003DMT400023111	Potato	cytosol	87.69	87.8
PGSC0003DMT400022865	Potato	cytosol	86.87	87.35
PGSC0003DMT400074970	Potato	cytosol	33.42	82.61
VIT_05s0020g01320.t01	Wine grape	cytosol	82.68	82.12
KRH37131	Soybean	cytosol, nucleus	81.73	81.18
KRH02236	Soybean	cytosol, nucleus	81.46	80.91
KRH50876	Soybean	endoplasmic reticulum	81.46	80.91
KRH12127	Soybean	cytosol	81.33	80.78
PGSC0003DMT400013645	Potato	cytosol	8.53	80.77
GSMUA_Achr1P14740_001	Banana	cytosol	80.65	80.11
GSMUA_AchrUn_...	Banana	cytosol	78.48	79.78
GSMUA_Achr7P03700_001	Banana	cytosol	79.84	79.3
EES00748	Sorghum	cytosol	78.48	77.96
TraesCS1D01G098500.3	Wheat	cytosol	78.35	77.82
TraesCS1B01G118000.1	Wheat	cytosol	78.35	77.82
HORVU1Hr1G020400.1	Barley	cytosol	78.35	77.72
TraesCS1A01G090000.1	Wheat	cytosol	78.08	77.55
VIT_07s0104g01590.t01	Wine grape	cytosol	77.67	77.46
EES19028	Sorghum	cytosol	77.94	77.42
TraesCS1D01G098400.2	Wheat	cytosol	77.4	76.68
TraesCS1A01G089900.1	Wheat	cytosol, golgi	77.4	76.68
TraesCS1B01G117900.1	Wheat	cytosol	77.27	76.54
Zm00001d010858_P007	Maize	cytosol	77.4	76.37
HORVU1Hr1G020390.1	Barley	cytosol	76.73	76.01
PGSC0003DMT400097727	Potato	cytosol	17.59	75.58
KRH15695	Soybean	cytosol	36.94	74.79
Zm00001d024855_P007	Maize	cytosol	76.45	72.9
PGSC0003DMT400038140	Potato	cytosol	22.19	72.25
CDX91291	Canola	nucleus	11.5	69.67
PGSC0003DMT400085888	Potato	cytosol	9.34	50.0
PGSC0003DMT400063662	Potato	cytosol	15.02	38.28
PGSC0003DMT400003338	Potato	cytosol	34.37	34.65
PGSC0003DMT400016765	Potato	cytosol	34.1	34.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:102605003	MapMan:19.2.2.8.1.2	ncoils:Coil
InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M1AT40	PFAM:PF00888
PFAM:PF10557	EnsemblPlantsGene:PGSC0003DMG400011384	PGSC:PGSC0003DMG400011384	EnsemblPlants:PGSC0003DMT400029607	ScanProsite:PS01256	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniParc:UPI000295CF1D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006359412.1	SEG:seg

Description

Cullin 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400011384]

Coordinates

chr9:-:52202376..52210067

Molecular Weight (calculated)

86286.0 Da

IEP (calculated)

7.206

GRAVY (calculated)

-0.427

Length

739 amino acids

Sequence
(BLAST)

001: MAMSQLKIIE LEEGWEFMQR GITKLKKILE GQQHSFSSEE YMMLYTTIYN MCTQKPPNDY SQQLYEKYRE AFVEYINSTV LPALRERHDE FMLREFVKRW
101: ANHKLMVRWL SRFFHYLDRY FIARRSLPGL HEVGLMCFRD LIYQELNGKA RDAVNVLIEQ EREGEQIDRG LLKNVLDIFV GIGMGEMEYY ENDFEDAMLK
201: DTAAYYSRKA SSWIVEDSCP DYMLKAEECL KKEKDRVSHY LHVLSETKLL EKVQNELLVV YTNQLLEKEH SGCRVLLRDD KVEDLSRMYR LFHRIPKGLE
301: PVSNMFKQHV VAEGMVLVQQ AEDTTNSKAE SSGSGEQVFV RKLIELHDKY MAYVTNCFAN NTLFHKALKE AFEVFCNKIV SGCSSAELLA SFCDNVLKKG
401: GSEKLSDDDI EETLDKVVKL LAYISDKDLF AEFYRKKLSR RLLFDKSAND DHERLILTKL KQQCGGQFTS KMEGMVTDLT LARENQNHFQ EYLSNNPAAS
501: PGIDLTVTVL TTGFWPSYKS SDLCLPVEMV KCVEVFKEFY QTKTKHRKLT WIYSLGTCNI NGKFDSKTIE LILGTYQAAA LLLFNSSDRL SYSEIKSQLN
601: LADDDLVRLL QSLSCAKYKI LIKEPSNRTV SSSDHFEFNS KFTDRMRRIR VPLPPVDERK KVVEDVDKDR RYAIDACIVR IMKSRKVLPH QQLVLECVEQ
701: LSRMFKPDFK AIKKRIEDLI TRDYLERDKE NPNLFKYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.