Factsheet for PGSC0003DMT400023111

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023105	Potato	cytosol	74.93	97.53
PGSC0003DMT400022865	Potato	cytosol	93.36	93.74
PGSC0003DMT400029607	Potato	cytosol	87.8	87.69
PGSC0003DMT400074970	Potato	cytosol	35.23	86.96
Solyc09g010050.1.1	Tomato	cytosol	85.09	85.44
PGSC0003DMT400061802	Potato	cytosol	84.42	84.76
PGSC0003DMT400097727	Potato	cytosol	18.29	78.49
PGSC0003DMT400013645	Potato	cytosol	8.13	76.92
VIT_05s0020g01320.t01	Wine grape	cytosol	76.56	75.94
KRH37131	Soybean	cytosol, nucleus	76.15	75.54
KRH12127	Soybean	cytosol	76.02	75.4
KRH02236	Soybean	cytosol, nucleus	76.02	75.4
GSMUA_AchrUn_...	Banana	cytosol	74.12	75.24
KRH50876	Soybean	endoplasmic reticulum	75.75	75.13
GSMUA_Achr1P14740_001	Banana	cytosol	75.47	74.87
GSMUA_Achr7P03700_001	Banana	cytosol	75.07	74.46
TraesCS1A01G090000.1	Wheat	cytosol	72.9	72.31
TraesCS1B01G118000.1	Wheat	cytosol	72.9	72.31
TraesCS1D01G098500.3	Wheat	cytosol	72.9	72.31
HORVU1Hr1G020400.1	Barley	cytosol	72.9	72.21
EES00748	Sorghum	cytosol	72.63	72.04
EES19028	Sorghum	cytosol	72.63	72.04
KRH15695	Soybean	cytosol	35.37	71.51
VIT_07s0104g01590.t01	Wine grape	cytosol	71.68	71.39
TraesCS1A01G089900.1	Wheat	cytosol, golgi	71.95	71.18
TraesCS1D01G098400.2	Wheat	cytosol	71.95	71.18
TraesCS1B01G117900.1	Wheat	cytosol	71.82	71.05
Zm00001d010858_P007	Maize	cytosol	72.09	71.03
HORVU1Hr1G020390.1	Barley	cytosol	71.68	70.91
Zm00001d024855_P007	Maize	cytosol	71.27	67.87
PGSC0003DMT400038140	Potato	cytosol	20.05	65.2
CDX91291	Canola	nucleus	9.89	59.84
PGSC0003DMT400085888	Potato	cytosol	9.08	48.55
PGSC0003DMT400063662	Potato	cytosol	13.69	34.83
PGSC0003DMT400016765	Potato	cytosol	32.52	32.7
PGSC0003DMT400003338	Potato	cytosol	32.25	32.47

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:102598676	MapMan:19.2.2.8.1.2	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M1AHT3	PFAM:PF00888	PFAM:PF10557
EnsemblPlantsGene:PGSC0003DMG400008949	PGSC:PGSC0003DMG400008949	EnsemblPlants:PGSC0003DMT400023111	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000296D687	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006341096.1	:	:

Description

Cullin 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400008949]

Coordinates

chr9:-:2548789..2551005

Molecular Weight (calculated)

85949.6 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.371

Length

738 amino acids

Sequence
(BLAST)

001: MAMSDVKIIE FEEGWNFMQK GITKLKKILE GEELSFDSDE YVMLYTTIFN MCTQNKPPPN NNDYSQHLYD KYRQVIVDYI NYTVMPSLRE RHDEFILREI
101: VKRWANHKVM IRWLSRFFNY LERFFTARRS LLGLAEVGLM CFRDLVYEEL KGKARDAVIV LIEQEREGEQ IDRGLLKNVL DIFVGIGMGN MEYYENDFED
201: AMLKHTAAYY SRKASSWIVE DSCPDYMLKA EDCLKKEKDR VSHYLHVVSE TKLLEKVQNE LLVVYTNELL EKEHSGCRVL LRDDKVEDLS RMYRLFHRIN
301: KGLEPVSNMF KQHVVAEGMV LVQQAEDTTN SKSETPFFVR KLIELYDKYM AYVTDCFANN SLFHKALKVA FEVFCNKIVA GCSSAELLAS YCDNILKKGG
401: SEKLCDDAIE ETLDKVVKLL AYINDKDLFA EFCRKKLSRR LLFDKSANDE HERLILTKLK QQCGGQFTSK MEGMLTDLTL AKENQNNFQE YLTNNPSTSP
501: GIDFSVTVLT SGFWPSYKSC DLSLPVEMAK CVQVFNEFYQ TKTKHRKLTW IYSLGTCNVN GKFDSKTIEL ILGTYQAAVL LLFNSSDRLS YSEIKSQLNL
601: ADDDLIRLLQ SLSCAKYKIL IKEPSNTDVS SSDHFEFNSK FTDRMRRIRV PLPPVDERKK VVEDVGKDRR YAIDACIVRI MKSRKVLPHQ QLVAECVEYL
701: SSMFKPDLKA IKKQMEDLIT RDYLERDQEN PNLFKYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.