Factsheet for Solyc09g010050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023105	Potato	cytosol	67.21	87.13
PGSC0003DMT400023111	Potato	cytosol	85.44	85.09
PGSC0003DMT400022865	Potato	cytosol	84.08	84.08
Solyc09g074680.2.1	Tomato	cytosol	82.04	81.49
Solyc06g084520.2.1	Tomato	cytosol	79.32	78.78
Solyc01g067100.2.1	Tomato	cytosol	71.97	71.29
Solyc05g018040.1.1	Tomato	cytosol	22.99	67.33
Solyc01g067210.2.1	Tomato	cytosol	51.56	66.61
Solyc06g008710.1.1	Tomato	cytosol	63.54	62.85
CDX91291	Canola	nucleus	10.07	60.66
Solyc01g067140.1.1	Tomato	cytosol	33.33	60.64
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	10.48	57.46
Solyc01g067270.2.1	Tomato	cytosol	17.14	55.02
Solyc01g067200.1.1	Tomato	cytosol	12.38	47.4
Solyc06g008080.1.1	Tomato	cytosol	18.37	44.12
Solyc01g067120.2.1	Tomato	cytosol	8.98	39.29
Solyc01g067260.2.1	Tomato	plastid	11.16	39.23
Solyc01g099290.2.1	Tomato	cytosol	13.33	36.84
Solyc01g010820.2.1	Tomato	cytosol	32.11	32.15
Solyc02g087900.2.1	Tomato	cytosol	31.97	32.06
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	30.88	28.92
Solyc02g070460.2.1	Tomato	plastid	30.48	27.93

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	InterPro:Cullin_CS	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630
InterPro:IPR016158	InterPro:IPR036388	UniProt:K4CR34	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF74788	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc09g010050.1	EnsemblPlants:Solyc09g010050.1.1	UniParc:UPI000276CAE7	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:3455757..3457964

Molecular Weight (calculated)

85613.4 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.297

Length

735 amino acids

Sequence
(BLAST)

001: MSEVKIIEFE DGWEFMEKGI TKLKKILQEE EEICFDSEEY MMLYTTIFNM CTQSMPPPYI NNHSKQLYEN YKQVFVEYID STVLPCLRDR HDEFLLKEIV
101: KRWANHKVMI RWLSRFFQYL ERFFINAKSL PGLKEVGLMC FRDLVYEELK VKARDVVFVL IERERDGEKI DRSLLKSVVD IFVAVGMGNM ECYVNDFEFA
201: MLEDTAGYYS RKASSWIGED SCPDYMLNAE ECLKKEKERV SNYLHVVSES KLLEKVRYEL LVVYTNQLLE KEHSGIRVLL RDDKVDDLSR MYRLFYKIDK
301: GLVPVSAMFK QHVVAEGMYL VQQADDTTNR QSETPFFVRK VIELYDKYMS YVTSCFANHS LFHKALKEAF EVFCNKIVSG CSSAELLASY CDSILKKGGS
401: EKLSDDAIEE TLDKVVKLLA YINDKDLFGE FCRKKLSRRL LFSKCANDEH ERLMLTKLKQ YCGGQFTSKM EGMVTDLTLA KENQNDFQEY LSNNASTGID
501: LTVTVLTSGF WPSYKSCDLS LPVEMAKCVQ VFNEFYQTTT KHRKLTWIYS LGTCNVIGKF DSKTIELILG TYQAAVLSLF NSSDRLSYSE IKSQLNLADD
601: DLIRLLQSLS CAKYKILIKD PSNATVTSSD HFEFNSKFTD RMRRVRVPLP LVDERKKVVE DVGKDRRYAI DACIVRIMKS RKVLPHQQLV AECVEQLSSM
701: FKPDLKAIKK QIEDLITREY LERDEENPNL FKYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.