Factsheet for Solyc01g067170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
nucleus 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067140.1.1	Tomato	cytosol	62.69	20.79
Solyc01g067210.2.1	Tomato	cytosol	66.42	15.64
Solyc01g067100.2.1	Tomato	cytosol	70.9	12.8
KRG96405	Soybean	cytosol	62.69	11.38
Solyc06g084520.2.1	Tomato	cytosol	62.69	11.35
KRH68142	Soybean	cytosol	62.69	11.34
Solyc09g074680.2.1	Tomato	cytosol	61.19	11.08
Solyc09g010050.1.1	Tomato	cytosol	57.46	10.48
Solyc06g008710.1.1	Tomato	cytosol	57.46	10.36
GSMUA_Achr9P17620_001	Banana	cytosol	54.48	9.91
Solyc02g087900.2.1	Tomato	cytosol	38.06	6.96
Solyc01g010820.2.1	Tomato	cytosol	37.31	6.81
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	38.81	6.62
Solyc02g070460.2.1	Tomato	plastid	38.81	6.48
Solyc05g018040.1.1	Tomato	cytosol	6.72	3.59
Solyc01g067270.2.1	Tomato	cytosol	0.75	0.44
Solyc01g067200.1.1	Tomato	cytosol	0.0	0.0
Solyc01g067120.2.1	Tomato	cytosol	0.0	0.0
Solyc01g067260.2.1	Tomato	plastid	0.0	0.0
Solyc01g099290.2.1	Tomato	cytosol	0.0	0.0
Solyc06g008080.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g067170.1.1	EnsemblPlantsGene:Solyc01g067170.1	Gene3D:1.10.10.10	InterPro:Cullin_neddylation_domain	InterPro:IPR036388	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	PFAM:PF10557	SEG:seg	SMART:SM00884
SUPFAM:SSF46785	UniParc:UPI0002762D5B	UniProt:K4AWW6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:+:75576408..75576971

Molecular Weight (calculated)

15917.6 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.513

Length

134 amino acids

Sequence
(BLAST)

001: MLFLFGFFIP FHVRSTRFST RSQAPKTISP TDVFEFNSKF TDKMRRIKIP FPAVDEKKKI IEDLDKDRPY AIDASIVRIM KRHKVLAHQQ LAVECVQKLG
101: RMFKPDVKAI EKRIKDLISR EYLERDKDNP NLYK

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.