Factsheet for Solyc06g008080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038140	Potato	cytosol	54.58	73.57
CDX91291	Canola	nucleus	21.57	54.1
Solyc01g067200.1.1	Tomato	cytosol	27.78	44.27
Solyc01g067260.2.1	Tomato	plastid	25.49	37.32
Solyc01g067120.2.1	Tomato	cytosol	19.93	36.31
Solyc01g067270.2.1	Tomato	cytosol	20.59	27.51
Solyc01g099290.2.1	Tomato	cytosol	23.53	27.07
Solyc06g084520.2.1	Tomato	cytosol	53.92	22.3
Solyc09g074680.2.1	Tomato	cytosol	51.63	21.35
Solyc01g067100.2.1	Tomato	cytosol	51.63	21.29
Solyc09g010050.1.1	Tomato	cytosol	44.12	18.37
Solyc01g067210.2.1	Tomato	cytosol	26.47	14.24
Solyc06g008710.1.1	Tomato	cytosol	32.68	13.46
Solyc01g010820.2.1	Tomato	cytosol	19.28	8.04
Solyc02g087900.2.1	Tomato	cytosol	17.65	7.37
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	15.36	5.99
Solyc02g070460.2.1	Tomato	plastid	15.36	5.86
Solyc05g018040.1.1	Tomato	cytosol	2.61	3.19
Solyc01g067140.1.1	Tomato	cytosol	2.29	1.73
PGSC0003DMT400097727	Potato	cytosol	0.33	0.58
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1310.10	MapMan:35.1	InterPro:Cullin_N	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	UniProt:K4C3I8	PFAM:PF00888	PANTHER:PTHR11932	PANTHER:PTHR11932:SF124
SUPFAM:SSF74788	EnsemblPlantsGene:Solyc06g008080.1	EnsemblPlants:Solyc06g008080.1.1	TMHMM:TMhelix	UniParc:UPI000276652B	SEG:seg

Description

No Description!

Coordinates

chr6:-:1955416..1957081

Molecular Weight (calculated)

36071.9 Da

IEP (calculated)

7.938

GRAVY (calculated)

-0.207

Length

306 amino acids

Sequence
(BLAST)

001: MNLMKIVEFE EGWYIIQEGI EKAKRILEGQ TESFSGDEYM MLYTKPPSYS YASQLYDKYK EALDEYINST VLPALREKQD AELMLRELVK RWKDYKRMLR
101: WLSIFFHYLS RYYIPRRSLP TLNDVGLTCF DNLVYKELSS KAINAVIMLA SIISLIFVFI FPESCDTMYI AKERDDTAAY YSRKAPNWIV EDSSSDYMLK
201: VEECLKKEKD RVSHYLHVIT EKKLLEKVKH ELLVVYTDQL LEKEHSESHA LLRDDKVLVT FLLFTISFLA VLVKCYLLLS LSSALRLGTN QIVQKWKETL
301: SSKNKK

Best Arabidopsis Sequence Match ( AT1G43140.1 )
(BLAST)

001: MATILFKVIM MKELILLEEG WSVMKTGVAK LQRILEDLSE PPFDPGQYIN LYTIIYDMCL QQPPNDYSQE LYNKYRGVVD HYNKETVLPS MRERHGEYML
101: RELVKRWANH KILVRWLSRF CFYLDRFYVA RRGLPTLNDV GFTSFHDLVY QEIQSEAKDV LLALIHKERE GEQIDRTLVK NVIDVYCGNG VGQMVIYEED
201: FESFLLQDTA SYYSRKASRW SQEDSCPDYM LKAEECLKLE KERVTNYLHS TTEPKLVEKV QNELLVVVAK QLIENEHSGC LALLRDDKMG DLSRMYRLYR
301: LIPQGLEPIA DLFKQHVTAE GNALIKQAAD AATNQDASAS QVLVRKEIEL HDKYMVYVDE CFQKHSLFHK LLKEAFEVFC NKTVAGASSA EILATYCDNI
401: LKTRGGSEKL SDEATEITLE KVVNLLVYIS DKDLFAEFYR KKQARRLLFD RSGIMKEVTD ITLARELQTN FVDYLSANMT TKLGIDFTVT VLTTGFWPSY
501: KTTDLNLPTE MVNCVEAFKV FYGTKTNSRR LSWIYSLGTC HILGKFEKKT MELVVSTYQA AVLLLFNNAE RLSYTEISEQ LNLSHEDLVR LLHSLSCLKY
601: KILIKEPMSR TISKTDTFEF NSKFTDKMRK IRVPLPPMDE RKKVVEDVDK DRRYAIDAAL VRIMKSRKVL AHQQLVSECV EHLSKMFKPD IKMIKKRIED
701: LINRDYLERD TENANTFKYV A

Arabidopsis Description

Putative cullin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P0CH31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.