Factsheet for PGSC0003DMT400038140

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91291	Canola	nucleus	30.84	57.38
Solyc06g008080.1.1	Tomato	cytosol	73.57	54.58
PGSC0003DMT400085888	Potato	cytosol	26.87	44.2
KRH15695	Soybean	cytosol	48.02	29.86
PGSC0003DMT400063662	Potato	cytosol	35.24	27.59
PGSC0003DMT400061802	Potato	cytosol	74.89	23.13
PGSC0003DMT400029607	Potato	cytosol	72.25	22.19
KRH02236	Soybean	cytosol, nucleus	70.48	21.51
KRH37131	Soybean	cytosol, nucleus	70.04	21.37
KRH50876	Soybean	endoplasmic reticulum	70.04	21.37
KRH12127	Soybean	cytosol	70.04	21.37
VIT_05s0020g01320.t01	Wine grape	cytosol	69.6	21.24
GSMUA_AchrUn_...	Banana	cytosol	67.4	21.05
GSMUA_Achr1P14740_001	Banana	cytosol	68.28	20.83
GSMUA_Achr7P03700_001	Banana	cytosol	67.84	20.7
TraesCS1D01G098500.3	Wheat	cytosol	66.96	20.43
TraesCS1B01G118000.1	Wheat	cytosol	66.96	20.43
EES00748	Sorghum	cytosol	66.96	20.43
HORVU1Hr1G020400.1	Barley	cytosol	66.96	20.4
VIT_07s0104g01590.t01	Wine grape	cytosol	66.52	20.38
TraesCS1A01G090000.1	Wheat	cytosol	66.52	20.3
PGSC0003DMT400022865	Potato	cytosol	65.2	20.14
PGSC0003DMT400023111	Potato	cytosol	65.2	20.05
EES19028	Sorghum	cytosol	65.2	19.89
TraesCS1A01G089900.1	Wheat	cytosol, golgi	64.76	19.71
TraesCS1B01G117900.1	Wheat	cytosol	64.76	19.71
TraesCS1D01G098400.2	Wheat	cytosol	64.76	19.71
HORVU1Hr1G020390.1	Barley	cytosol	64.32	19.57
Zm00001d010858_P007	Maize	cytosol	63.0	19.09
Zm00001d024855_P007	Maize	cytosol	62.11	18.19
PGSC0003DMT400023105	Potato	cytosol	44.05	17.64
PGSC0003DMT400016765	Potato	cytosol	24.67	7.63
PGSC0003DMT400003338	Potato	cytosol	23.35	7.23
PGSC0003DMT400097727	Potato	cytosol	0.44	0.58
PGSC0003DMT400074970	Potato	cytosol	0.0	0.0
PGSC0003DMT400013645	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1310.10	MapMan:35.1	ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	UniProt:M1B6D9	PFAM:PF00888	EnsemblPlantsGene:PGSC0003DMG400014708
PGSC:PGSC0003DMG400014708	EnsemblPlants:PGSC0003DMT400038140	PANTHER:PTHR11932	PANTHER:PTHR11932:SF124	SUPFAM:SSF74788	UniParc:UPI000295771A
SEG:seg	:	:	:	:	:

Description

Cullin 1A [Source:PGSC_GENE;Acc:PGSC0003DMG400014708]

Coordinates

chr6:+:1962709..1966421

Molecular Weight (calculated)

26963.3 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.547

Length

227 amino acids

Sequence
(BLAST)

001: MCSQKPPYSY ASQLYDKYKE ALDEYINSTV LPALREKQDA EFMLRELVKR WENYKRMLRW LFIFFHYLSR YIDRRLLPTL NDVGLTCFDN LIDKEREGEQ
101: IDRALLKNVL GIFAEIGRGE MEYYVSDFGD AMLRDTAAYY SRKASSWIVE DSYSDYMLKV EECLKKEKDR VSHYLHVSTE KKLLEKVKHE LLVVYTNQLL
201: EKEHSESRAL LRDEKAESSG SLCQMIP

Best Arabidopsis Sequence Match ( AT1G59790.2 )
(BLAST)

001: MDSRRMSRPR QIKFEEGWSN IQKGITKLIR ILEGEPEPTF YFSECFKLYT IIYDMCVQRS DYSQQLYEKY RKVIEDYTIQ TVLPSLREKH DEDMLRELVK
101: RWNNHKIMVK WLSKFFVYID RHLVRRSKIP IPSLDEVGLT CFLDLVYCEM QSTAKEVVIA LIHKEREGEQ IDRALVKNVL DIYVENGMGT LEKYEEDFES
201: FMLQDTASYY SRKASRWTEE DSCPDYMIKV EECLKMERER VTHYLHSITE PKLVEKIQNE LLVMVTKNRL ENEHSGFSAL LRDDKKNDLS RIYRLYLPIP
301: KRLGRVADLF KKHITEEGNA LIKQADDKTT NQLLIELHNK FIVYVIECFQ NHTLFHKALE EAFETLRSQG GSE

Arabidopsis Description

Putative cullin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.