CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02236	Soybean	cytosol, nucleus	98.79	98.79
KRH12127	Soybean	cytosol	97.18	97.18
KRH37131	Soybean	cytosol, nucleus	97.04	97.04
VIT_05s0020g01320.t01	Wine grape	cytosol	93.01	93.01
Solyc01g067100.2.1	Tomato	cytosol	92.47	92.72
KRH15695	Soybean	cytosol	44.49	90.68
GSMUA_Achr7P03700_001	Banana	cytosol	90.19	90.19
GSMUA_AchrUn_...	Banana	cytosol	88.04	90.1
GSMUA_Achr1P14740_001	Banana	cytosol	89.78	89.78
Os01t0369000-01	Rice	cytosol	85.48	85.48
TraesCS1B01G118000.1	Wheat	cytosol	85.48	85.48
HORVU1Hr1G020400.1	Barley	cytosol	85.48	85.37
EES00748	Sorghum	cytosol	85.35	85.35
TraesCS1A01G090000.1	Wheat	cytosol	85.35	85.35
TraesCS1D01G098500.3	Wheat	cytosol	85.35	85.35
PGSC0003DMT400061802	Potato	cytosol	83.74	84.76
EES19028	Sorghum	cytosol	84.01	84.01
Solyc01g067210.2.1	Tomato	cytosol	63.31	82.78
Zm00001d010858_P007	Maize	cytosol	83.2	82.64
TraesCS1D01G098400.2	Wheat	cytosol	82.26	82.04
TraesCS1A01G089900.1	Wheat	cytosol, golgi	82.26	82.04
TraesCS1B01G117900.1	Wheat	cytosol	82.12	81.9
HORVU1Hr1G020390.1	Barley	cytosol	81.99	81.77
PGSC0003DMT400029607	Potato	cytosol	80.91	81.46
Os05t0149600-02	Rice	cytosol, plasma membrane	27.96	80.31
KRG96405	Soybean	cytosol	79.57	80.22
KRH68142	Soybean	cytosol	79.3	79.62
Zm00001d024855_P007	Maize	cytosol	82.53	79.23
PGSC0003DMT400023105	Potato	cytosol	58.87	77.25
PGSC0003DMT400023111	Potato	cytosol	75.13	75.75
PGSC0003DMT400022865	Potato	cytosol	74.73	75.65
CDX91291	Canola	nucleus	12.1	73.77
Solyc01g067140.1.1	Tomato	cytosol	39.78	73.27
PGSC0003DMT400038140	Potato	cytosol	21.37	70.04
PGSC0003DMT400097727	Potato	cytosol	14.92	64.53
PGSC0003DMT400085888	Potato	cytosol	10.08	54.35
KRH21073	Soybean	cytosol	16.13	41.96
KRH18483	Soybean	cytosol	33.87	34.38
KRH45896	Soybean	cytosol	33.74	34.29
KRG93520	Soybean	cytosol	33.74	34.24
KRG99095	Soybean	cytosol	33.6	34.15
KRH70713	Soybean	cytosol	31.32	32.05
KRH42547	Soybean	cytosol	32.12	31.08
KRH58640	Soybean	cytosol	32.12	30.84
KRH11182	Soybean	cytosol, plastid	31.85	30.08
KRH21072	Soybean	plastid	14.11	21.74

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100786561	MapMan:19.2.2.8.1.2	EMBL:ACUP02004716
ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlantsGene:GLYMA_07G249100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	UniProt:I1KN10	InterPro:IPR016158	InterPro:IPR036388
EnsemblPlants:KRH50876	ProteinID:KRH50876	ProteinID:KRH50876.1	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniParc:UPI0002338C2B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:42731024..42737830

Molecular Weight (calculated)

86712.4 Da

IEP (calculated)

7.091

GRAVY (calculated)

-0.462

Length

744 amino acids

Sequence
(BLAST)

001: MSMSERKTID LEQGWDFMLK GITKLKNILE GLPEPQFSSE DYMMLYTTIY NMCTQKPPHD YSQQLYDKYK ESFEEYIVST VLPSLREKHD EFMLRELVKR
101: WANHKIMVRW LSRFFHYLDR YFIARRSLPP LNEVGLTCFR DLIYKELNGK VRDAVISLID QEREGEQIDR ALLKNVLDIF VEIGMGQMDH YENDFEAAML
201: KDTSSYYSRK ASNWILEDSC PDYMLKAEEC LKREKDRVAH YLHSSSEPKL LEKVQHELLS VYANQLLEKE HSGCHALLRD DKVEDLSRMF RLFSKIPRGL
301: DPVSNIFKQH VTTEGMALVK QAEDAASNKK AEKKDIVGLQ EQVFVRKVIE LHDKYLAYVN DCFQNHTLFH KALKEAFEVF CNKGVAGSSS AELLASFCDN
401: ILKKGGSEKL SDEAIEETLE KVVKLLAYIS DKDLFAEFYR KKLARRLLFD KSANDDHERS ILTKLKQQCG GQFTSKMEGM VTDLTLAKEN QTSFEEYLSN
501: NPNADPGIDL TVTVLTTGFW PSYKSFDLNL PAEMIRCVEV FKEFYQTKTK HRKLTWIYSL GTCNISGKFD PKTVELIVTT YQASALLLFN LSDRLSYSEI
601: MTQLNLSDDD VIRLLHSLSC AKYKILNKEP NTKTISSTDY FEFNYKFTDK MRRIKIPLPP VDEKKKVIED VDKDRRYAID ASIVRIMKSR KVLGYQQLVV
701: ECVEQLGRMF KPDVKAIKKR IEDLISRDYL ERDKDNANMF KYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.