Factsheet for VIT_05s0020g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067100.2.1	Tomato	cytosol	94.22	94.47
KRH02236	Soybean	cytosol, nucleus	93.28	93.28
GSMUA_AchrUn_...	Banana	cytosol	91.13	93.26
KRH12127	Soybean	cytosol	93.15	93.15
GSMUA_Achr7P03700_001	Banana	cytosol	93.01	93.01
KRH50876	Soybean	endoplasmic reticulum	93.01	93.01
KRH37131	Soybean	cytosol, nucleus	93.01	93.01
GSMUA_Achr1P14740_001	Banana	cytosol	92.2	92.2
Os01t0369000-01	Rice	cytosol	87.77	87.77
EES00748	Sorghum	cytosol	87.63	87.63
TraesCS1B01G118000.1	Wheat	cytosol	87.37	87.37
HORVU1Hr1G020400.1	Barley	cytosol	87.37	87.25
TraesCS1D01G098500.3	Wheat	cytosol	87.23	87.23
TraesCS1A01G090000.1	Wheat	cytosol	87.1	87.1
PGSC0003DMT400061802	Potato	cytosol	85.48	86.53
KRH15695	Soybean	cytosol	42.07	85.75
EES19028	Sorghum	cytosol	85.08	85.08
Os05t0149600-02	Rice	cytosol, plasma membrane	29.3	84.17
Zm00001d010858_P007	Maize	cytosol	84.41	83.85
Solyc01g067210.2.1	Tomato	cytosol	63.98	83.66
TraesCS1A01G089900.1	Wheat	cytosol, golgi	83.6	83.38
TraesCS1D01G098400.2	Wheat	cytosol	83.6	83.38
TraesCS1B01G117900.1	Wheat	cytosol	83.47	83.24
VIT_07s0104g01590.t01	Wine grape	cytosol	82.8	83.13
HORVU1Hr1G020390.1	Barley	cytosol	83.06	82.84
PGSC0003DMT400029607	Potato	cytosol	82.12	82.68
Zm00001d024855_P007	Maize	cytosol	83.6	80.26
PGSC0003DMT400023105	Potato	cytosol	59.41	77.95
PGSC0003DMT400023111	Potato	cytosol	75.94	76.56
PGSC0003DMT400022865	Potato	cytosol	75.27	76.19
CDX91291	Canola	nucleus	12.1	73.77
Solyc01g067140.1.1	Tomato	cytosol	40.05	73.76
PGSC0003DMT400038140	Potato	cytosol	21.24	69.6
PGSC0003DMT400097727	Potato	cytosol	14.78	63.95
PGSC0003DMT400085888	Potato	cytosol	9.81	52.9
VIT_05s0020g01340.t01	Wine grape	mitochondrion	9.81	45.34
VIT_01s0026g02230.t01	Wine grape	cytosol	34.68	35.2
VIT_14s0108g00490.t01	Wine grape	cytosol	35.22	33.42
VIT_10s0003g03710.t01	Wine grape	cytosol	32.26	29.93

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100233054	wikigene:100233054	MapMan:19.2.2.8.1.2
ProteinID:ACA30309	ProteinID:ACA30309.1	ProteinID:CBI26060	ProteinID:CBI26060.3	EntrezGene:CUL1	wikigene:CUL1
InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
UniProt:D7T6D9	EMBL:EU447160	EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
TIGR:TC70264	UniParc:UPI00015C7A12	ArrayExpress:VIT_05s0020g01320	EnsemblPlantsGene:VIT_05s0020g01320	EnsemblPlants:VIT_05s0020g01320.t01	unigene:Vvi.1265
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002272195	RefSeq:XP_002272195.1	RefSeq:XP_010649725.1	SEG:seg

Description

No Description!

Coordinates

chr5:-:3031153..3046213

Molecular Weight (calculated)

86893.3 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.508

Length

744 amino acids

Sequence
(BLAST)

001: MTMNERKTID LEQGWEFMQK GITKLKNILE GLPEPQFSSE DYMMLYTTIY NMCTQKPPHD YSQQLYDKYR ESFEEYITTT VLPSLREKHD EFMLRELVKR
101: WSNHKVMVRW LSRFFHYLDR YFIARRSLPA LNEVGLTCFR DLVYQELYSK VRDAVISLID QEREGEQIDR ALLKNVLDIF VEIGMGQMEQ YENDFEAAML
201: KDTAAYYSRK ASNWILEDSC PDYMLKAEEC LKREKDRVSH YLHSSSEPKL LEKVQNELLS VFANQLLEKE HSGCHALLRD DKVDDLSRMY RLFSKIPRGL
301: EPVSNIFKQH VTAEGTALVK QAEDAASNKK ADKRDVVGLQ EQVFVRKVIE LHDKYLAYVN DCFNNHTLFH KALKEAFEVF CNKGVAGSSS AELLATFCDN
401: ILKKGGSEKL SDEAIEETLE KVVKLLAYIS DKDLFAEFYR KKLARRLLFD KSANDDHERS ILTKLKQQCG GQFTSKMEGM VTDLTLAREN QTHFEEYLSN
501: NPNANPGIDL TVTVLTTGFW PSYKSFDLNL PAEMVKCVEV FREFYQTKTK HRKLTWIYSL GTCNINGKFE PKTMELIVTT YQASALLLFN ASDRLSYSEI
601: MTQLNLTDDD VVRLLHSLSC AKYKILNKEP NTKTISPTDY FEFNSKFTDK MRRIKIPLPP VDEKKKVIED VDKDRRYAID ASIVRIMKSR KVLGHQQLVM
701: ECVEQLGRMF KPDFKAIKKR IEDLITRDYL ERDKDNPNTF RYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.