Factsheet for VIT_14s0108g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g02230.t01	Wine grape	cytosol	82.53	88.27
PGSC0003DMT400003338	Potato	cytosol	82.53	88.27
Solyc02g087900.2.1	Tomato	cytosol	82.4	88.13
GSMUA_Achr7P18000_001	Banana	cytosol	78.06	86.44
KRG93520	Soybean	cytosol	80.48	86.08
GSMUA_Achr8P16990_001	Banana	cytosol	77.68	86.02
KRH18483	Soybean	cytosol	80.36	85.95
GSMUA_AchrUn_...	Banana	cytosol	77.3	85.59
EES05529	Sorghum	cytosol	78.57	83.7
Zm00001d018043_P001	Maize	cytosol	78.19	83.29
TraesCS6D01G285800.1	Wheat	cytosol	78.06	83.15
TraesCS6A01G306600.1	Wheat	cytosol	77.93	83.02
TraesCS6B01G335200.1	Wheat	cytosol	77.93	83.02
Os02t0746000-01	Rice	cytosol	77.17	82.2
GSMUA_AchrUn_...	Banana	cytosol	62.12	81.85
HORVU6Hr1G075720.2	Barley	cytosol	77.55	81.5
VIT_10s0003g03710.t01	Wine grape	cytosol	37.5	36.66
VIT_05s0020g01320.t01	Wine grape	cytosol	33.42	35.22
VIT_07s0104g01590.t01	Wine grape	cytosol	32.14	34.01
VIT_05s0020g01340.t01	Wine grape	mitochondrion	3.44	16.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100254227	wikigene:100254227	MapMan:19.2.2.8.2.1
EMBL:AM478489	ProteinID:CAN72935	ProteinID:CAN72935.1	ProteinID:CCB47538	ProteinID:CCB47538.1	ncoils:Coil
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	UniProt:F6H5R7
EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388	EntrezGene:LOC100254227
wikigene:LOC100254227	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF95
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000210A987
ArrayExpress:VIT_14s0108g00490	EnsemblPlantsGene:VIT_14s0108g00490	EnsemblPlants:VIT_14s0108g00490.t01	unigene:Vvi.1997	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002283300	RefSeq:XP_002283300.1	:	:	:	:

Description

No Description!

Coordinates

chr14:+:29255307..29264737

Molecular Weight (calculated)

91089.6 Da

IEP (calculated)

7.650

GRAVY (calculated)

-0.506

Length

784 amino acids

Sequence
(BLAST)

001: MSTQKKRNFQ IEAFKHRVVV DPKYAEKTWK ILEHAIHEIY NHNASGLSFE ELYSAPKRNF QIGPLKRQIV MDPNYADKTW KILEEGIHEI YNCNISGLSF
101: EELYRNAYNM VLHKFGEKLY SGLVTTMTHH LEVISKSIEA AQGGLFLEEL NRKWADHNKA LQMIRDILMY MDRTFIPSTH KTPVHELGLN LWRDNIIHSA
201: KIQTRLQDTL LDLVLRERTG EVINRGLMRN VIKMLMDLGS SVYQDDFEKH FLEVSADFYR AESQQFIECC DCGEYLKKAE RRLNEEMERV SHYLDAKSEA
301: KITSVVEKEM VESHMQRLVH MENSGLINML VDDKYEDLGR MYSLFRRVPN GLFIIRDVMT SHIRSTGKQL VTDPERLKDP VDFVQRLLDE KDKNDKIINL
401: AFNNDKTFQN ALNSSFEYFI NLNSRSPEFI SLFVDDKLRK GLKGVSEEDV EIVLDKVMML FRYLQEKDVF EKYYKQHLAK RLLSGKTVSD DAERSLIVKL
501: KTECGYQFTS KLEGMFTDMK TSEDTMQGFY ASSFAETGDG PTLAVQVLTT GSWPTQPSAT CNLPAEILGV CEKFRGYYLG THTGRRLSWQ TNMGTADLKA
601: TFGRGQKHEL NVSTHQMCAL MLFNNADRLS YKEIEQATEI PASDLKRCLQ SMACVKGKNI LRKEPMSKDI AEDDAFFVND KFSSKFYKVK IGTVVAQRES
701: EPENQETRQR VEEDRKPQIE AAIVRIMKSR RVLDHNNIVA EVTKQLQSRF LPSPVLIKKR IESLIEREFL ERDKVDRKLY RYLA

Best Arabidopsis Sequence Match ( AT1G69670.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKQRVVV DPKYADKTWK ILEHAIHEIY NHNASGLSFE ELYRNAYNMV LHKYGDKLYT GLVTTMTFHL KEICKSIEEA QGGAFLELLN
101: RKWNDHNKAL QMIRDILMYM DRTYVSTTKK THVHELGLHL WRDNVVYSSK IQTRLLNTLL DLVHKERTGE VIDRVLMRNV IKMFMDLGES VYQDDFEKPF
201: LEASAEFYKV ESMEFIESCD CGEYLKKAEK PLVEEVERVV NYLDAKSEAK ITSVVEREMI ANHVQRLVHM ENSGLVNMLL NDKYEDMGRM YSLFRRVANG
301: LVTVRDVMTL HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDRIINMA FNNDKTFQNA LNSSFEYFVN LNTRSPEFIS LFVDDKLRKG LKGVGEEDVD
401: LILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERNLIVKLK TECGYQFTSK LEGMFTDMKT SHDTLLGFYN SHPELSEGPT LVVQVLTTGS
501: WPTQPTIQCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAVF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPT PDLKRCLQSM
601: ACVKGKNVLR KEPMSKEIAE EDWFVVNDRF ASKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRRV LDHNNIIAEV TKQLQTRFLA
701: NPTEIKKRIE SLIERDFLER DNTDRKLYRY LA

Arabidopsis Description

CUL3BCullin-3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9L0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.