Factsheet for PGSC0003DMT400003338

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087900.2.1	Tomato	cytosol	99.05	99.05
PGSC0003DMT400016765	Potato	cytosol	86.49	86.38
GSMUA_Achr7P18000_001	Banana	cytosol	81.45	84.32
KRG93520	Soybean	cytosol	84.17	84.17
KRH18483	Soybean	cytosol	83.63	83.63
GSMUA_Achr8P16990_001	Banana	cytosol	80.63	83.47
GSMUA_AchrUn_...	Banana	cytosol	80.49	83.33
VIT_14s0108g00490.t01	Wine grape	cytosol	88.27	82.53
EES05529	Sorghum	cytosol	82.54	82.2
Zm00001d018043_P001	Maize	cytosol	81.99	81.66
Os02t0746000-01	Rice	cytosol	81.86	81.52
TraesCS6D01G285800.1	Wheat	cytosol	81.72	81.39
TraesCS6B01G335200.1	Wheat	cytosol	81.58	81.25
TraesCS6A01G306600.1	Wheat	cytosol	81.58	81.25
GSMUA_AchrUn_...	Banana	cytosol	65.76	81.01
HORVU6Hr1G075720.2	Barley	cytosol	81.17	79.76
PGSC0003DMT400013645	Potato	cytosol	4.77	44.87
PGSC0003DMT400097727	Potato	cytosol	8.32	35.47
PGSC0003DMT400023105	Potato	cytosol	27.01	34.92
PGSC0003DMT400029607	Potato	cytosol	34.65	34.37
PGSC0003DMT400061802	Potato	cytosol	34.11	34.01
PGSC0003DMT400074970	Potato	cytosol	13.37	32.78
PGSC0003DMT400023111	Potato	cytosol	32.47	32.25
PGSC0003DMT400022865	Potato	cytosol	32.33	32.24
PGSC0003DMT400085888	Potato	cytosol	4.5	23.91
PGSC0003DMT400038140	Potato	cytosol	7.23	23.35
PGSC0003DMT400063662	Potato	cytosol	6.96	17.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:102586525	MapMan:19.2.2.8.2.1	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M0ZLG9	PFAM:PF00888
PFAM:PF10557	EnsemblPlantsGene:PGSC0003DMG400001321	PGSC:PGSC0003DMG400001321	EnsemblPlants:PGSC0003DMT400003338	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI00029687EE	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006338458.1	:	:

Description

ATCUL3/ATCUL3A/CUL3/CUL3A [Source:PGSC_GENE;Acc:PGSC0003DMG400001321]

Coordinates

chr2:-:46264503..46268790

Molecular Weight (calculated)

85220.8 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.511

Length

733 amino acids

Sequence
(BLAST)

001: MSAPKKKNFQ IEAFKHRVVV DPKYAEKTWK ILEHAIHEIY NHNASGLSFE ELYRNAYNMV LHKFGEKLYS GLVSTMTAHL KEIAKHIEST QGGLFLEELN
101: RIWAEHNKAL QMIRDILMYM DRTFIPSTHK TPVHELGLNL WRDNIIHSSK IHKRLQDTLL ELVQHERTGE VINRGLMRNV IQMLMDLGSS VYQEDFEKPF
201: LDVSADFYRL ESQQYIECCD CGDYLKKAEK RLIEEIERVS HYLDTKSEPK LTNVVEKEMI ESHMHRLVHM ENSGLVNMIV NDKYEDLGRM YNLFRRVSTG
301: LALIRDVMTS HIREIGKQLV TDPEKLKDPV DFVQRLLDEK DKHDKIISSA FNNDKTFQNA LNSSFEFFIN LNPRSPEFIS LFVDDKLRKG LKGVTEEDVE
401: IILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SQDTMQGFHA AAGADLAEGP SLTVQVLTTG
501: SWPTQSVNTC NLPSEILGVC DRFKTYYLGT HTGRRLSWQT NMGTADLKAT FGKGQKHELN VSTYQMCILM LFNKADRMSY KEIEQATEIP ASDLKRCLQS
601: LACVKGKNVL RKEPMSKDIA EDDAFYFNDK FSSKFYKVKI GTVVAQKESE PEKQETRQRV EEDRKPQIEA AIVRIMKSRR VLDHNNIVAE VTKQLQSRFL
701: PNPVVIKKRI ESLIEREFLE RDKTDRKLYR YLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.