Factsheet for Zm00001d018043_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007068_P001
Zm00001d007888_P002
Zm00001d008233_P001
Zm00001d009478_P001
Zm00001d010341_P002
Zm00001d012765_P005
Zm00001d013094_P001
Zm00001d017101_P001
Zm00001d018887_P002
Zm00001d019328_P003
Zm00001d022366_P001
Zm00001d025707_P001
Zm00001d034400_P003
Zm00001d035819_P001
Zm00001d036840_P001
Zm00001d038134_P001
Zm00001d039469_P001
Zm00001d040462_P001
Zm00001d042443_P001
Zm00001d042549_P001
Zm00001d043517_P002
Zm00001d043519_P004
Zm00001d046179_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	Zm00001d036840_P001	AT1G01640.1	15772280
AT1G26830.1	Zm00001d009478_P001	AT1G05690.1	15772280
AT1G26830.1	Zm00001d035819_P001	AT1G05690.1	15772280
AT1G26830.1	Zm00001d042549_P001	AT1G05690.1	15772280
AT1G26830.1	Zm00001d046179_P001	AT1G05690.1	15772280
AT1G26830.1	Zm00001d039469_P001	AT1G64280.1	19490895
AT1G26830.1	Zm00001d008233_P001	AT2G26990.1	12615944
AT1G26830.1	Zm00001d040462_P001	AT2G26990.1	12615944
AT1G26830.1	Zm00001d007888_P002	AT2G39760.1	15618422
AT1G26830.1	Zm00001d007888_P002	AT2G39760.1	15659098
AT1G26830.1	Zm00001d007888_P002	AT2G39760.1	15772280
AT1G26830.1	Zm00001d007068_P001	AT3G06190.1	15772280
AT1G26830.1	Zm00001d022366_P001	AT3G06190.1	15772280
AT1G26830.1	Zm00001d013094_P001	AT3G43700.1	15772280
AT1G26830.1	Zm00001d018887_P002	AT3G43700.1	15772280
AT1G26830.1	Zm00001d034400_P003	AT3G43700.1	15772280
AT1G26830.1	Zm00001d017101_P001	AT3G48360.1	15772280
AT1G26830.1	Zm00001d025707_P001	AT3G48360.1	15772280
AT1G26830.1	Zm00001d042443_P001	AT3G48360.1	15772280
AT1G26830.1	Zm00001d012765_P005	AT4G07670.1	15749712
AT1G26830.1	Zm00001d043517_P002	AT4G07670.1	15749712
AT1G26830.1	Zm00001d043519_P004	AT4G07670.1	15749712
AT1G26830.1	Zm00001d019328_P003	AT4G08455.1	15749712
AT1G26830.1	Zm00001d010341_P002	AT5G13060.1	15659098
AT1G26830.1	Zm00001d038134_P001	AT5G13060.1	15659098
AT1G26830.1	Zm00001d036840_P001	AT5G48510.1	15772280
AT1G26830.1	Zm00001d017101_P001	AT5G63160.1	15772280
AT1G26830.1	Zm00001d025707_P001	AT5G63160.1	15772280
AT1G26830.1	Zm00001d042443_P001	AT5G63160.1	15772280
AT1G69670.1	Zm00001d007888_P002	AT2G39760.1	15618422
AT1G69670.1	Zm00001d007888_P002	AT2G39760.1	15659098
AT1G69670.1	Zm00001d012765_P005	AT4G07670.1	15749712
AT1G69670.1	Zm00001d043517_P002	AT4G07670.1	15749712
AT1G69670.1	Zm00001d043519_P004	AT4G07670.1	15749712
AT1G69670.1	Zm00001d019328_P003	AT4G08455.1	15749712
AT1G69670.1	Zm00001d010341_P002	AT5G13060.1	15659098
AT1G69670.1	Zm00001d038134_P001	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05529	Sorghum	cytosol	98.1	98.1
Os02t0746000-01	Rice	cytosol	93.75	93.75
TraesCS6B01G335200.1	Wheat	cytosol	93.75	93.75
TraesCS6D01G285800.1	Wheat	cytosol	93.61	93.61
TraesCS6A01G306600.1	Wheat	cytosol	93.48	93.48
HORVU6Hr1G075720.2	Barley	cytosol	92.8	91.56
GSMUA_Achr7P18000_001	Banana	cytosol	81.25	84.46
GSMUA_AchrUn_...	Banana	cytosol	80.84	84.04
GSMUA_Achr8P16990_001	Banana	cytosol	80.84	84.04
VIT_01s0026g02230.t01	Wine grape	cytosol	82.61	82.95
PGSC0003DMT400003338	Potato	cytosol	81.66	81.99
Solyc02g087900.2.1	Tomato	cytosol	81.39	81.72
KRG93520	Soybean	cytosol	80.57	80.9
Solyc01g010820.2.1	Tomato	cytosol	80.57	80.79
KRH18483	Soybean	cytosol	80.43	80.76
PGSC0003DMT400016765	Potato	cytosol	80.16	80.38
KRG99095	Soybean	cytosol	78.94	79.37
KRH45896	Soybean	cytosol	78.94	79.37
AT1G26830.1	Thale cress	cytosol	78.67	79.1
AT1G69670.1	Thale cress	cytosol	78.26	78.69
CDY50732	Canola	cytosol	78.12	78.55
CDY16196	Canola	cytosol	78.12	78.55
CDY46437	Canola	cytosol	77.99	78.42
CDY45004	Canola	cytosol	77.99	78.42
Bra024680.1-P	Field mustard	cytosol	77.85	78.28
Bra016291.1-P	Field mustard	cytosol	77.85	78.28
VIT_14s0108g00490.t01	Wine grape	cytosol	83.29	78.19
Zm00001d049487_P001	Maize	cytosol	74.73	74.42
KRH70713	Soybean	cytosol	69.84	70.7
Zm00001d024466_P001	Maize	cytosol	70.79	70.6
Zm00001d034361_P001	Maize	cytosol, plastid	40.08	35.46
Zm00001d013116_P002	Maize	plastid	40.35	34.53
Zm00001d010858_P007	Maize	cytosol	34.51	33.91
Zm00001d024855_P007	Maize	cytosol	33.83	32.13
Zm00001d042193_P001	Maize	cytosol	9.1	22.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:103627724	MapMan:19.2.2.8.2.1	UniProt:A0A1D6HKC3
ProteinID:AQK74879.1	ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158
InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF74
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000221E1E4
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d018043	EnsemblPlants:Zm00001d018043_P001	EnsemblPlants:Zm00001d018043_T001	:

Description

Cullin-3B

Coordinates

chr5:-:212717180..212720262

Molecular Weight (calculated)

85588.2 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.542

Length

736 amino acids

Sequence
(BLAST)

001: MSSGGPPRKR NFKIEAFKNR VDLDPKYAER TWKVLEHAIH EIYNRNASGL SFEELYRSAY NMVLHKYGEK LYDGLQSTMT WRLKEISKSI EAAQGGLFLE
101: ELNAKWMDHN KALQMIRDIL MYMDRTYVPT SHRTPVHELG LNLWRDHIIH SPMIHSRLVN TLLDLIKRER MGEVINRGLM RSITKMLMDL GPAVYQDDFE
201: KPFLDVSARF YSVESQEFIV CCDCGNYLKK AERRLNEEME RVSHYLDAGS EAKITSVVEK EMIANHMHRL VHMENSGLVN MLVDDQYKDL GRMYSLFRRV
301: PDGLSTIRDV MTSYLRETGK QLVIDPESLK DPVEFVQRLL NEKDKHDKII SVAFGNDKTF QNALNSSFEY FLNLNSRSPE FISLYVDDKL RKGLKGATEE
401: DVEVILDKVM MLFRYLQEKD VFEKYYKQHL AKRLLSSKTV SDDAERSMIV KLKTECGYQF TSKLEGMFTD MKTSQDTMQD FYAKKSEELG DGPTLDVHIL
501: TTGSWPTQPS PPCNLPTEIL TVCEKFRAYY LGTHNGRRLT WQTNMGTADI KATFGKGQKH ELNVSTYQMC VLMLFNNADG LTYKDIERDT EIPASDLKRC
601: LQSLACVKGK NVLRKEPMSK DISEDDTFYF NDKFTSKLVK VKIGTVVAQK ESEPEKQETR QRVEEDRKPQ IEAAIVRIMK SRRVLDHNSI VAEVTKQLQA
701: RFLPNPVVIK KRIESLIERE FLERDKVDRK LYRYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.