Factsheet for Zm00001d043519_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	Zm00001d018043_P001	AT1G26830.1	15749712
AT4G07670.1	Zm00001d018043_P001	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	87.7	87.7
HORVU0Hr1G020860.1	Barley	cytosol	15.71	86.47
TraesCS3B01G311000.1	Wheat	plastid	78.01	78.33
Os01t0740500-00	Rice	plastid	77.87	77.98
HORVU3Hr1G070540.14	Barley	cytosol, extracellular	40.03	77.72
TraesCS3D01G277000.1	Wheat	plastid	77.19	77.5
TraesCS3A01G276800.2	Wheat	plastid	75.55	75.86
HORVU3Hr1G070560.2	Barley	plastid	36.89	73.37
Zm00001d012765_P005	Maize	extracellular	58.06	58.62
Zm00001d043517_P002	Maize	mitochondrion	58.88	58.01
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	52.73	56.93
Solyc12g008540.1.1	Tomato	extracellular	6.42	55.95
KRH74232	Soybean	endoplasmic reticulum, plastid	37.98	55.49
HORVU0Hr1G020850.2	Barley	plastid	29.51	54.0
AT5G19740.1	Thale cress	vacuole	50.14	53.89
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	50.82	53.68
CDX92505	Canola	plasma membrane, plastid	49.04	53.66
AT4G07670.1	Thale cress	cytosol	20.36	53.21
CDY42292	Canola	endoplasmic reticulum, plasma membrane	48.91	52.96
CDY35864	Canola	plasma membrane, plastid	47.81	52.4
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.17	51.35
VIT_11s0016g03010.t01	Wine grape	cytosol	52.46	49.81
KRH74227	Soybean	cytosol	13.39	47.57
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	37.57	38.57
CDY44276	Canola	plastid	8.74	38.32

Protein Annotations

Gene3D:1.20.930.40	EntrezGene:100280279	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	UniProt:A0A1D6NCY9
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036757	ProteinID:ONM38352.1
ProteinID:ONM38354.1	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404
PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom
InterPro:TFR-like_dimer_dom_sf	TMHMM:TMhelix	UniParc:UPI0004DEA5D2	EnsemblPlantsGene:Zm00001d043519	EnsemblPlants:Zm00001d043519_P004	EnsemblPlants:Zm00001d043519_T004
SEG:seg	:	:	:	:	:

Description

Peptidase M28 family protein

Coordinates

chr3:+:202650470..202657105

Molecular Weight (calculated)

79884.5 Da

IEP (calculated)

5.723

GRAVY (calculated)

-0.139

Length

732 amino acids

Sequence
(BLAST)

001: MSHLDAASLL APSPPLAKPH PRSRFLCLIS SMLAVLGASL AGLLLFALHP APNPVPNYAS LFLSLGSNDT AASHLRALTL HPHVAGTKAN ALTARYVFDA
101: LSALSFPTHI TPYSVLLSYP VHRSLSLSAP GRGVVTSFSL KQETYPNDPY AAAAAETIPT FYAYSASGSV SAEAVYANYG REEDFSYLAS RGVDVAGKVA
201: FARYGRIHCE DIAHNARAAG AAAAVVYTDP LQYGGAPGEG WFPDSRWLPP SGVQVGSLFR GVGDPTTPMW ASSEGCERVS LEEAMNTDDM PLIPALPVSA
301: QDAMEIHRAM GGAVAPEDWQ GREDGPVYRL GPGPAVLNLT YLGNDSMATI ENVFAIIEGA EEPDRYVILG NHRDAWTFGA SDPNSGTAAM IELAKRFSML
401: QKQGWRPRRT IIFCSWDAEE YGLTGSTEWV EENREMLYSR AVAYLNIDVS VVGPGFLPST TPQLDELLQQ VTKVVQDPDN SSQTVYDSWI KSSTPLRVLR
501: LGDGGSDYSA FVQHVGIPSM NIIFGEGPGY PVYHSLYDDY VWMAKFGDPA FRRHVAAASI WGMMALRLAN EDILPFNYMS YAIELEAYTK TVENEVKGTT
601: VTCSPLYNSI RTLGAAATKV NNEQKELQKL LLSKQLNKDS LKIRQLNDRL MQTERAFTSR EGIFKLEWFK HLVYGPSDQN DWDTAVYPGI ANAIASARSS
701: NTSESWKFVQ HEIYRVARAV TQASAILSGR LT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.