CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	EES05529	AT1G26830.1	15749712
AT4G07670.1	EES05529	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043519_P004	Maize	plastid	87.7	87.7
HORVU0Hr1G020860.1	Barley	cytosol	15.57	85.71
TraesCS3A01G276800.2	Wheat	plastid	78.96	79.29
TraesCS3B01G311000.1	Wheat	plastid	75.82	76.13
HORVU3Hr1G070540.14	Barley	cytosol, extracellular	39.07	75.86
TraesCS3D01G277000.1	Wheat	plastid	75.14	75.45
Os01t0740500-00	Rice	plastid	75.14	75.24
HORVU3Hr1G070560.2	Barley	plastid	36.2	72.01
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	58.88	59.37
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	54.51	58.85
Solyc12g008540.1.1	Tomato	extracellular	6.56	57.14
HORVU0Hr1G020850.2	Barley	plastid	30.19	55.25
KRH74232	Soybean	endoplasmic reticulum, plastid	37.57	54.89
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	51.37	54.26
CDY42292	Canola	endoplasmic reticulum, plasma membrane	49.45	53.55
CDX92505	Canola	plasma membrane, plastid	48.91	53.51
CDY35864	Canola	plasma membrane, plastid	48.77	53.44
AT5G19740.1	Thale cress	vacuole	49.59	53.3
AT4G07670.1	Thale cress	cytosol	20.36	53.21
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.17	51.35
KRH74227	Soybean	cytosol	14.21	50.49
VIT_11s0016g03010.t01	Wine grape	cytosol	53.14	50.45
EER93326	Sorghum	plasma membrane, vacuole	38.8	39.94
CDY44276	Canola	plastid	8.61	37.72

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	UniProt:A0A1B6Q5Y6	ncoils:Coil
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036757	EnsemblPlants:KXG33331	ProteinID:KXG33331
ProteinID:KXG33331.1	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404
PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	EnsemblPlantsGene:SORBI_3003G290900	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187
InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	TMHMM:TMhelix	UniParc:UPI00081ACC47	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:62361391..62366338

Molecular Weight (calculated)

80166.9 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.131

Length

732 amino acids

Sequence
(BLAST)

001: MSRLDAASLL APWPPLAKPH PRGRFLCLLS SMLAVLGASL AVLLFFALQP VPNVVPNYEA LFLSLGSNDT AASHLRALTL HPHVAGTKAN AITARYVLDA
101: LSALSFPAHI TPYSVLLSYP VHRSLSLSAP GRGVVTSFSL KQETYPNDPY AAAAAETIPT FYAYAASGSV SAEAVYANYG REEDFAYLAS RGVDVAGKVA
201: LARYGRIHCE DIAHNARAAG TAAAVVYTDP LEYGGAPGEG WFPDSRWLPP SGVQVGSLFR GVGDPTTPMW ASSEGCERVS VEEAMNTDDM PLIPALPVSA
301: QDAMEIHRAM GGAVAPADWQ SRKGSPVYHL GPGPAVLNLT YLGNDTMATI ENVFAIIEGT EEPDRYVILG NHRDAWTFGA SDPNSGTAAM IELAQRFSML
401: QKQGWRPRRT IIFCSWDAEE YGLTGSTEWV EENQEMLYSR AVAYLNVDVS VVGPGFLPST TPQLDELLQQ VTKVVQDPDN SSQTVYDSWI KLSFPPRVLR
501: LGDGGSDYSA FVQHVGIPSM NIIFGEGPGY PVYHSLYDDY VWMAKFGDPG FRRHVAAASI WGMMALRLAN EEILPFNYMS YAIELEEYTK TVENEVKGTT
601: VTCSPLYNSI RTLRAAATKV NNEQKELQKQ LLSKQLNKDS LRIRQLNDRL MQTERAFTSR EGIFKLEWFK HLVYGPSDQN DWDTAVYPGI ANAIASARSS
701: NTSESWKFVQ HEVYRVARAV TQASAILSGR LT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.