Factsheet for TraesCS3D01G277000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G311000.1	Wheat	plastid	96.98	96.98
HORVU3Hr1G070540.14	Barley	cytosol, extracellular	49.38	95.49
TraesCS3A01G276800.2	Wheat	plastid	90.67	90.67
Os01t0740500-00	Rice	plastid	77.78	77.56
Zm00001d043519_P004	Maize	plastid	77.5	77.19
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	75.45	75.14
TraesCS3D01G276900.1	Wheat	plastid	60.08	58.71
Solyc12g008540.1.1	Tomato	extracellular	6.72	58.33
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	59.95	58.27
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	53.36	57.37
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.95	56.31
KRH74232	Soybean	endoplasmic reticulum, plastid	37.86	55.09
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	51.99	54.69
CDX92505	Canola	plasma membrane, plastid	49.93	54.41
AT5G19740.1	Thale cress	vacuole	50.75	54.33
CDY42292	Canola	endoplasmic reticulum, plasma membrane	49.66	53.55
CDY35864	Canola	plasma membrane, plastid	48.83	53.29
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.66	52.51
KRH74227	Soybean	cytosol	14.81	52.43
AT4G07670.1	Thale cress	cytosol	20.03	52.14
VIT_11s0016g03010.t01	Wine grape	cytosol	53.36	50.45
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	39.64	40.59
CDY44276	Canola	plastid	8.92	38.92

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:IPR036757
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G277000	EnsemblPlants:TraesCS3D01G277000.1	TIGR:cd02121	TIGR:cd08022	SEG:seg

Description

No Description!

Coordinates

chr3D:+:384441844..384447025

Molecular Weight (calculated)

78797.7 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.183

Length

729 amino acids

Sequence
(BLAST)

001: MSRPDAASLL SPSPPPFKPH RRGRLLPSIL AVLAAAAALF LLAVLRSPPT PSPNLGSLFL SLGSNNTAAS HLRALTLHPH VAGTKANSLT AAYVLHAFSS
101: LSIPSHITPY SVLLSYPVHR SLSLSAGPGR AAKSFSLTQD TYPSDPYARA AAEVTPTFFA YSASGSVSAE AVYANYGREE DFAYLSSRGV DVAGRVALAR
201: YGRIHCEDIV HNARAAGAAA ALVYPDPLEY GGSAGEGSFP DSRWLPPSGV QVGSLFRGVG DPTTPMWASS EGCERVSVED AMATDDMPGI PALPVSARDA
301: AEIQQVLGGA EAPADWQGRD GSPVYRLGPG PAVLNLTYQG NDTMATIENV FAVIEGAEEP DRYVILGNHR DAWTFGAADP NSGTAAMIEL AQRFSMLQKQ
401: GWRPRRTIIF CSWDAEEYGL TGSTEWVEEN REMLSTRAVA YLNIDVSVVG PVLLPSTTPQ LDELLLETIK LVQDPDNSSQ TVYDSWVKAN ASPKIQRLGN
501: GGSDYAAFVQ HVGIPSTNLI FGEGPGYPVY HSLYDDFVWV EKFADPGFRR HVAAASIWGI MALRLADEEI IPFDYMSYTT ELEAYTKVVE KETEGTTVSC
601: SPLYNSIRAL KKAATKVNSE RKDIQRELSS KQLSKDSMRI RGLNDRLMQA ERAFTNREGI FKQAWYKHLI YGPSEQNDWD TASYPGIADA IATARSSNTS
701: ASWKLVQHEV HRVARAVAQA SAVLSGSLT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.