Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G07670.1 CDY16196 AT1G26830.1 15749712
AT4G07670.1 CDY45004 AT1G26830.1 15749712
AT4G07670.1 CDY46437 AT1G26830.1 15749712
AT4G07670.1 CDY50732 AT1G26830.1 15749712
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35864 Canola plasma membrane, plastid 80.33 81.29
CDX92505 Canola plasma membrane, plastid 80.03 80.87
AT5G19740.1 Thale cress vacuole 78.7 78.12
AT4G07670.1 Thale cress cytosol 28.85 69.64
Solyc12g008540.1.1 Tomato extracellular 8.28 66.67
KRH74232 Soybean endoplasmic reticulum, plastid 47.78 64.47
PGSC0003DMT400000952 Potato endoplasmic reticulum, plasma membrane, vacuole 65.53 63.92
Solyc12g008550.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 23.67 61.78
KRH74227 Soybean cytosol 18.64 61.16
CDY44276 Canola plastid 14.35 58.08
GSMUA_Achr9P06030_001 Banana endoplasmic reticulum 57.99 57.82
VIT_11s0016g03010.t01 Wine grape cytosol 65.83 57.72
EES01459 Sorghum cytosol, endoplasmic reticulum, peroxisome, plastid 57.84 53.86
TraesCS3A01G275800.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 57.69 53.79
Os01t0743300-01 Rice cytosol, endoplasmic reticulum, plasma membrane 57.69 53.57
Zm00001d012765_P005 Maize extracellular 56.95 53.1
Os01t0740600-01 Rice cytosol 6.8 52.87
TraesCS3D01G275800.2 Wheat cytosol, endoplasmic reticulum, plasma membrane 57.54 51.87
TraesCS3B01G309500.4 Wheat cytosol, endoplasmic reticulum, plasma membrane 57.25 51.6
Os01t0740500-00 Rice plastid 55.77 51.57
Os01t0740650-00 Rice cytosol, mitochondrion, plasma membrane, plastid 33.58 50.22
TraesCS3A01G276800.2 Wheat plastid 53.7 49.79
TraesCS3B01G311000.1 Wheat plastid 53.55 49.66
TraesCS3D01G277000.1 Wheat plastid 53.55 49.66
KXG33331 Sorghum endoplasmic reticulum, plasma membrane, plastid 53.55 49.45
TraesCS3D01G275700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, nucleus 56.51 49.23
Zm00001d043519_P004 Maize plastid 52.96 48.91
Zm00001d043517_P002 Maize mitochondrion 53.7 48.86
TraesCS3D01G276900.1 Wheat plastid 53.25 48.26
CDX76133 Canola cytosol 31.95 46.65
TraesCS3B01G310900.1 Wheat cytosol 53.25 45.0
TraesCS3A01G276700.1 Wheat cytosol 53.11 44.76
CDX73456 Canola plastid 42.46 40.88
CDX78257 Canola plastid 42.6 40.85
CDX76132 Canola plastid 7.54 25.63
CDY35863 Canola plastid 7.69 18.57
HORVU5Hr1G103870.2 Barley mitochondrion 7.84 13.87
Protein Annotations
Gene3D:1.20.930.40MapMan:19.4.5.7.3Gene3D:3.40.630.10Gene3D:3.50.30.30UniProt:A0A078HWV4EnsemblPlants:CDY42292
ProteinID:CDY42292ProteinID:CDY42292.1EnsemblPlantsGene:GSBRNA2T00074530001InterPro:IPR036757InterPro:PA_domainPFAM:PF02225
PFAM:PF04253PFAM:PF04389PANTHER:PTHR10404PANTHER:PTHR10404:SF45InterPro:Peptidase_M28SUPFAM:SSF47672
SUPFAM:SSF52025SUPFAM:SSF53187SignalP:SignalP-noTMInterPro:TFR-like_dimer_domInterPro:TFR-like_dimer_dom_sfTMHMM:TMhelix
UniParc:UPI0004EF239ESEG:seg::::
Description
BnaC02g08980DBnaC02g08980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWV4]
Coordinates
chrLK032520:+:165445..168437
Molecular Weight (calculated)
73817.0 Da
IEP (calculated)
5.069
GRAVY (calculated)
-0.171
Length
676 amino acids
Sequence
(BLAST)
001: MSKSTTSLAF LLAALSYFLL YSPPKPHYYH TLFLSASFSD NASIALNLRT LTRRPHIAGS VANAEAAAFV RSAFTSSSLK THLVSYQVSL TYPLHRSLLL
101: TPNASATPIT FTLEQEDVGD NPYAEEVTPT FHGYAKSGNV SGPAVYANYG RVQDFAGLNV SGAVVVARYG KIYRGDIVRN AHRAGALGVV VYTDKRDYGG
201: GGDECFPASK WMPPSGVQVG SVYNGLGDPT TPGWASVEGC ERLSEEAVEL SGDSPLIPSL PISAADAEVI LKSIVGDVAD GDVYPVGPGQ GILNLSYIGE
301: TVIARIENVI GVIEGEEEPD RYVILGNHRD AWSFGAVDPN SGTAVLLEIA QRLDKLQRRG WKPRRTIIFC NWDAEEYALI GSTEWVEENR EMLASRAVAY
401: LNVDCAVSGP GFRASATPQL DELIKQAAQE VQDPDNTTQT VYDSWIGSSN SGVIGRLGDL TSDYASFVQH VGVPAADMRF GGGYPVYHSM YDDFTWMEKF
501: GDPMFQRHVA MASVLGLVAL RLADEEVLPF NYVSYATELM KSAEDLEKDN LGHGIDVSPL FKSIQDLYTS AQGIHIEKEG IKGALKAREL NDRLMMAERA
601: LTDRDGLSGR TWYKHLVYGP AKYDEYGSES FPGIDDAIDN AKRVKTKNYW GLVQHEIWRV SRAITHASLV LKGVLR
Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)
001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I
Arabidopsis Description
LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.