Factsheet for TraesCS3D01G275700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum, mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 2
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	88.79	95.03
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	88.27	91.33
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	88.27	91.33
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	86.08	87.43
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	75.77	80.77
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	74.61	79.75
Zm00001d012765_P005	Maize	extracellular	73.32	78.48
Solyc12g008540.1.1	Tomato	extracellular	6.83	63.1
TraesCS3D01G277000.1	Wheat	plastid	56.31	59.95
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	52.19	59.73
TraesCS3D01G276900.1	Wheat	plastid	56.44	58.71
KRH74232	Soybean	endoplasmic reticulum, plastid	36.98	57.29
CDY35864	Canola	plasma membrane, plastid	49.1	57.04
CDX92505	Canola	plasma membrane, plastid	48.97	56.8
CDY42292	Canola	endoplasmic reticulum, plasma membrane	49.23	56.51
AT5G19740.1	Thale cress	vacuole	49.36	56.24
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	50.13	56.13
KRH74227	Soybean	cytosol	14.82	55.83
AT4G07670.1	Thale cress	cytosol	19.85	55.0
VIT_11s0016g03010.t01	Wine grape	cytosol	50.9	51.23
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.01	50.97
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	36.6	39.89
CDY44276	Canola	plastid	8.25	38.32

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:IPR036757
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
EnsemblPlantsGene:TraesCS3D01G275700	EnsemblPlants:TraesCS3D01G275700.1	TIGR:cd02121	TIGR:cd08022	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:382103295..382118296

Molecular Weight (calculated)

84362.5 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.239

Length

776 amino acids

Sequence
(BLAST)

001: MSAEDREKRY RSLRLLYYPL RSGSPAAPPH ARARHYRTDY PASPVPTPDA AAMPPPLGHD DSCLRAPLIP ATPPLPPRAT ARLHPLPLLV GALFAAYYHL
101: LVEPAPSYYQ SLFLSLGSND TAAAHLRALT VRPHLAGTEA NALAADHVVS TLSSLSFPTR VTPYEVLLSY PVRRSLSLSA PGRDTTAFAL VQDTYPGDPY
201: AAASAEVVPT FLAYAASGSA AAEVVYANYG RTEDYAYLAS RGVNVTGKVA LARYGKVYRG DIVKNARDAG AAAAVIFTDP KDYTPGKAFP DGPWMPPTGV
301: QVGSTFKGVG DPTTPMWASS EGCERVSVAE AMATDDMPGI PALPVSGRDG EEILRLVGGD VAPEDWQGGE GAPVYHLGPG PAVLNLSYTG NETLATIQNV
401: ISVIEGKEEP DRYVILGNHR DAWTFGAADP NSGTAALLEL AERLSKLQTK GWRPRRTIIL CNWDAEEYGL IGSTEWVEEN RAMLTSRTVA YLNVDVGVSG
501: SGLDASATPQ LDELLKQASK KVQNPDNGTE SLYDMWMASD GSLIGRLGGG GSDYSAFVQH IGIPSVQMSI WSEYAVYHSV YDDFTWMEKY GDPMFRRHVA
601: VASIWGLVAL GLSDEEILPF NYSSYVTELE NGAVDINKRV LGMPVSLSPI HKSIKQLNRA VLKVDSELQA LQTWKFWSPW RNNPLRVRDL NDRLMMTERA
701: FTEREGLSGR PWYKHMIYGP SLYNDYGAEA YPGVDDAIQT AKKANTSESW QSVQHEIHRV ARVISQSASV LSGGFS

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.