Factsheet for Solyc12g008550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	Solyc01g010820.2.1	AT1G26830.1	15749712
AT4G07670.1	Solyc01g010820.2.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0740600-01	Rice	cytosol	18.15	54.02
KRH74227	Soybean	cytosol	40.15	50.49
Solyc11g045240.1.1	Tomato	cytosol	12.36	39.51
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	90.35	33.77
CDY42292	Canola	endoplasmic reticulum, plasma membrane	61.78	23.67
CDY35864	Canola	plasma membrane, plastid	60.62	23.5
AT5G19740.1	Thale cress	vacuole	61.78	23.49
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	61.0	23.3
CDX92505	Canola	plasma membrane, plastid	59.85	23.17
VIT_11s0016g03010.t01	Wine grape	cytosol	66.41	22.31
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	56.76	20.25
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	55.98	19.92
Zm00001d012765_P005	Maize	extracellular	55.6	19.86
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.9	18.9
TraesCS3D01G277000.1	Wheat	plastid	52.51	18.66
TraesCS3B01G311000.1	Wheat	plastid	52.51	18.66
TraesCS3A01G276800.2	Wheat	plastid	51.74	18.38
Os01t0740500-00	Rice	plastid	51.35	18.19
Zm00001d043519_P004	Maize	plastid	51.35	18.17
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	51.35	18.17
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.51	18.13
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.12	18.0
TraesCS3D01G276900.1	Wheat	plastid	50.97	17.69
Zm00001d043517_P002	Maize	mitochondrion	49.03	17.09
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.97	17.01
TraesCS3B01G310900.1	Wheat	cytosol	52.51	17.0
TraesCS3A01G276700.1	Wheat	cytosol	51.74	16.71
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	25.87	14.82
KRH74232	Soybean	endoplasmic reticulum, plastid	20.46	10.58
Solyc11g045250.1.1	Tomato	plastid	23.94	10.56
AT4G07670.1	Thale cress	cytosol	3.47	3.21
HORVU5Hr1G103870.2	Barley	mitochondrion	1.54	1.05
Solyc12g008540.1.1	Tomato	extracellular	0.0	0.0
CDY44276	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc12g008550.1.1	EnsemblPlantsGene:Solyc12g008550.1	Gene3D:1.20.930.40	InterPro:IPR036757	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
ncoils:Coil	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	PFAM:PF04253	SUPFAM:SSF47672	SUPFAM:SSF53187
UniParc:UPI000276956E	UniProt:K4DBU3	MapMan:19.4.5.7.3	:	:	:

Description

No Description!

Coordinates

chr12:+:1949737..1951466

Molecular Weight (calculated)

28807.1 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.290

Length

259 amino acids

Sequence
(BLAST)

001: MLAARVVAYL NVDCAVQAGD FRASATPQLD ELIILNAQQV QDPDNSSQTI YESWLASGNV TTVKLGRLGG AGSNYAAFVQ HIGSPTLDMS FGEGYPVYHS
101: MYDDFVWMKK FGDPMFHRHV KSAEYLEAEI SDKGISLVPL YASIEKLRKA ATGIKNDIKA LKAKRSRGSV RELNDRLIMT ERAFTDRDGL SSRTWYKHLI
201: YAPAKHNDYG FNSFPGISDA IENAKSLNSS DSWYSVQHEV WRVARAITQA SLVLSGRLT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.