Factsheet for TraesCS3B01G309500.4

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	92.93	96.14
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	90.0	88.35
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.33	88.27
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	79.07	81.46
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	77.2	79.75
Zm00001d012765_P005	Maize	extracellular	76.0	78.62
Solyc12g008540.1.1	Tomato	extracellular	7.2	64.29
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	54.8	60.62
TraesCS3B01G311000.1	Wheat	plastid	58.0	59.67
KRH74232	Soybean	endoplasmic reticulum, plastid	39.07	58.48
CDY35864	Canola	plasma membrane, plastid	51.2	57.48
CDX92505	Canola	plasma membrane, plastid	51.2	57.4
CDY42292	Canola	endoplasmic reticulum, plasma membrane	51.6	57.25
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	52.53	56.85
AT5G19740.1	Thale cress	vacuole	51.6	56.83
AT4G07670.1	Thale cress	cytosol	20.53	55.0
KRH74227	Soybean	cytosol	15.07	54.85
TraesCS3B01G310900.1	Wheat	cytosol	57.73	54.12
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.13	52.51
VIT_11s0016g03010.t01	Wine grape	cytosol	53.47	52.01
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.13	40.17
CDY44276	Canola	plastid	8.27	37.13

Protein Annotations

EnsemblPlants:TraesCS3B01G309500.4	EnsemblPlantsGene:TraesCS3B01G309500	Gene3D:1.20.930.40	Gene3D:3.40.630.10	Gene3D:3.50.30.30	InterPro:IPR036757
InterPro:PA_domain	InterPro:Peptidase_M28	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	SEG:seg	SUPFAM:SSF47672	SUPFAM:SSF52025
SUPFAM:SSF53187	TIGR:cd02121	TIGR:cd08022	MapMan:19.4.5.7.3	:	:

Description

No Description!

Coordinates

chr3B:-:498058155..498065623

Molecular Weight (calculated)

81324.3 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.155

Length

750 amino acids

Sequence
(BLAST)

001: MPPPLGHDDS CLLTPLIPAT PPLPPRATAR LHPLPLLVGA LFATYYHLLV APAPSYYQSL FLSLGSNDTA AAHLRALTVR PHLAGTEANA LAAEHVVSTL
101: SSLSFPTRVT PYEVLLSYPV RRSLSLSAPG RDATAFALVQ DTYPGDPYAA ASAEVVPTFL AYAASGSAAA EVVYANYGRT EDYAYLASRG VNVTGKVALA
201: RYGKVYRGDI VKNARDAGAA AAVIFTDTKD YTPGKAFPDG PWMPATGVQV GSTFKGVGDP TTPMWASSGG CERVSIAEAM ATDDMPGIPA LPVSGRDGEE
301: ILRLIGGDVA PEDWQGGEGA PVYRLGPGPA VLNLTYTGNE TIATIQNVIS VIEGKEEPDR YVILGNHRDA WTFGAADPNS GTAALLELAE RLSKLQTKGW
401: RPRRTIILCN WDAEEYGLIG STEWVEENRA MLTSRTVAYL NVDVGVSGSG VDASATPQLD ELLKQASKKV QNPDNGTESL YDMWMASDSS QIGRLGGGGS
501: DYSAFVQHIG IPSVDMAIGS GYAVYHSLYD DFTWMEKYGD PMFRRHVVVA SIWGLVALRL SDEEILPFNY SSYVQELENG AVDINKRVLG MPVNLSPLHK
601: SIEQLNRAVL KVDSELQALQ TWKFWSPSQN DPLRVRDLND RLMMTERAFT EREGLSGRPW YKHMVSCCGF GKIRCWFITY HRAKGKEISQ IYGPSLYNDY
701: GAEVYPGVDD AIQTAKKANT TESWQSVQHE IHRIARVISQ AALVLSGGLT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.