Factsheet for Zm00001d012765_P005

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	endoplasmic reticulum, mitochondrion, peroxisome
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	Zm00001d018043_P001	AT1G26830.1	15749712
AT4G07670.1	Zm00001d018043_P001	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	92.0	91.87
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	81.24	80.91
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	79.17	79.17
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	80.41	77.73
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	78.62	76.0
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	79.03	75.0
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.48	73.32
Solyc12g008540.1.1	Tomato	extracellular	7.59	65.48
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	55.59	59.44
Zm00001d043519_P004	Maize	plastid	58.62	58.06
KRH74227	Soybean	cytosol	16.28	57.28
CDY42292	Canola	endoplasmic reticulum, plasma membrane	53.1	56.95
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	54.34	56.85
CDY35864	Canola	plasma membrane, plastid	52.14	56.59
Zm00001d043517_P002	Maize	mitochondrion	57.93	56.53
CDX92505	Canola	plasma membrane, plastid	52.0	56.35
KRH74232	Soybean	endoplasmic reticulum, plastid	38.62	55.89
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.86	55.6
AT5G19740.1	Thale cress	vacuole	51.59	54.92
AT4G07670.1	Thale cress	cytosol	20.97	54.29
VIT_11s0016g03010.t01	Wine grape	cytosol	55.45	52.14
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	39.45	40.11
CDY44276	Canola	plastid	8.14	35.33

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ProteinID:AQL00670.1	InterPro:IPR036757
UniProt:K7V8V3	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404
PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom
InterPro:TFR-like_dimer_dom_sf	UniParc:UPI0002221226	EnsemblPlantsGene:Zm00001d012765	EnsemblPlants:Zm00001d012765_P005	EnsemblPlants:Zm00001d012765_T005	SEG:seg

Description

Peptidase M28 family protein

Coordinates

chr8:-:180339773..180344851

Molecular Weight (calculated)

78600.8 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.166

Length

725 amino acids

Sequence
(BLAST)

001: MPPPQDGVDD SAARVPLLPP PAPRRAAVRL HPLPLLIAAT LAASYRLLFL APAPSYYQSL LLSLGSNDTA AAHLHALTIR PHLAGTGANA LAAAHVAATL
101: SSHSFRTRLT SYSVLLSYPA YRSLSLSAPD RDTVLFALKQ ETYAGDPYEA VSAEAVPTFL AYAASGSVSA EAVYANYGRA EDFAYLAARG IDVTGKVAVA
201: RYGEVFRGDI VRNARDAGAA AAVIYSDAKD YAAGKTFPDG PWMPPTGVQV GSTFKGVGDP TTPMWASSEG CERLTIAEAM SSDDMPGIPA LPVSWKDGET
301: ILQLIGGDVA PENWQGGDGA AAYRFGPGPA VLNLTYTGNE TMVTIQNVIS VIEGGEEPER YVILGNHRDA WTFGAVDPNS GTASLLELAQ RLSELQKKGW
401: RPRRTIILCN WDAEEYGLTG STEWVEENRA MLTSRTVAYL NVDSAVAGHG FYASATPQLD ELLKEASKQV QNPDNGTQSL YDLWMSSNSS PLIGRLGGGS
501: SDYSAFVQHI GIPSVDMAIG SDYPVYHSLY DDFIWMEKFG DPLFQRHVAA ASMWGLVALR LSDEEILPFN YSNYATELEN GALGISERVQ GMPVSLSPLH
601: KSIKEFRKAV AKVDSELKAL QTWKIWSPWR NNPLKVRDIN DRLMMTERAF TDREGLSGRP WYKHLIYAPS LHNDYGAEVY PGIGDAIERV KKTNTSESLQ
701: SIQHEIYRVS RVINQAALVL SGGLT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.