CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol, peroxisome

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 1
golgi 1
extracellular 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	EES05529	AT1G26830.1	15749712
AT4G07670.1	EES05529	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012765_P005	Maize	extracellular	91.87	92.0
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	82.78	82.55
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	80.17	80.28
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	81.41	78.8
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	79.75	77.2
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	80.44	76.44
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.75	74.61
Solyc12g008540.1.1	Tomato	extracellular	7.3	63.1
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	55.92	59.88
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	59.37	58.88
KRH74227	Soybean	cytosol	16.53	58.25
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	55.23	57.86
CDY42292	Canola	endoplasmic reticulum, plasma membrane	53.86	57.84
CDY35864	Canola	plasma membrane, plastid	53.03	57.63
CDX92505	Canola	plasma membrane, plastid	52.75	57.25
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.25	56.76
KRH74232	Soybean	endoplasmic reticulum, plastid	38.98	56.49
AT5G19740.1	Thale cress	vacuole	52.89	56.39
AT4G07670.1	Thale cress	cytosol	21.07	54.64
VIT_11s0016g03010.t01	Wine grape	cytosol	56.34	53.05
EER93326	Sorghum	plasma membrane, vacuole	38.84	39.66
CDY44276	Canola	plastid	8.13	35.33

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	EntrezGene:8075557	UniProt:C5XK00
EnsemblPlants:EES01459	ProteinID:EES01459	ProteinID:EES01459.1	InterPro:IPR036757	InterPro:PA_domain	PFAM:PF02225
PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	EnsemblPlantsGene:SORBI_3003G292200
SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	unigene:Sbi.20592	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
UniParc:UPI0001A8499F	RefSeq:XP_002456339.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:62476940..62481777

Molecular Weight (calculated)

78814.1 Da

IEP (calculated)

5.492

GRAVY (calculated)

-0.157

Length

726 amino acids

Sequence
(BLAST)

001: MPPPQDGAHD SAARVPLLPP PAPRRAAVRL RPLPLLIAAA FAASYRLLFH LAPAPSYYQS LLLSLGSNDT AAAHLHALTI RPHLAGTGAN ALAAAHVASA
101: LSSHSFPTRL TSYSVLLSYP AHRSLSLSAP DRDTVLFALK QETYAGDPYD AVSDEAVPTF LAYAASGSVT AEAVYANYGR AEDYAYLAAR GVNVTGKVAV
201: ARYGKVFRGD IVRNARDAGA AAAVIYTDAK DYAAGKAFPD GPWMPPTGVQ VGSTFKGVGD PTTPMWPSSE GCERLSVAEA MSSDDMPGIP ALPVSWMDGE
301: TILQLIGGDV APKDWQGGDG AAAYRIGPGP AVLNLTYIGN ETMVTIQNVI SVIEGREEPE RYVILGNHRD AWTFGAADPN SGTATLLELA QRLSELQKKG
401: WTPRRTIILC NWDAEEYGLT GSTEWVEENR AMLTSRTVAY LNVDIAVDGY GFYASATPQL DELLKEASKQ VQNPNNGTQS LYDLWMASNS SPLIGRLGGG
501: GSDYSAFVQH IGIPSVDMTI GSDYAVYHSL YDDFIWMEKF GDPLFQRHVA VASMWGLVAL RLSDEEILPF NYSNYATELE NGALDISESV LGVSVSLSPL
601: HKSIKEFRKA VLKVDSELKA LQTWKFWAPW KNSPLKVRDI NDRLMMTERA FTDREGLSGR PWYKHLIYAP SLHNDYGAQV YPGVDDAIQK AKKTNTSESW
701: QSVQHEIYRV SRVINQAALV LSGDLT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.