Factsheet for VIT_11s0016g03010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
golgi 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	VIT_01s0026g02230.t01	AT1G26830.1	15749712
AT4G07670.1	VIT_01s0026g02230.t01	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74232	Soybean	endoplasmic reticulum, plastid	46.69	71.86
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	64.33	71.57
KRH74227	Soybean	cytosol	18.55	69.42
Solyc12g008540.1.1	Tomato	extracellular	7.52	69.05
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.31	66.41
AT5G19740.1	Thale cress	vacuole	58.63	66.37
CDY42292	Canola	endoplasmic reticulum, plasma membrane	57.72	65.83
CDX92505	Canola	plasma membrane, plastid	57.07	65.77
CDY35864	Canola	plasma membrane, plastid	56.03	64.67
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	55.12	62.68
Os01t0740600-01	Rice	cytosol	6.87	60.92
AT4G07670.1	Thale cress	cytosol	22.05	60.71
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	53.44	56.59
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	53.05	56.34
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.14	55.45
Zm00001d012765_P005	Maize	extracellular	52.14	55.45
TraesCS3B01G311000.1	Wheat	plastid	50.84	53.77
Os01t0740500-00	Rice	plastid	50.97	53.76
TraesCS3A01G276800.2	Wheat	plastid	50.71	53.64
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.01	53.47
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.01	53.47
TraesCS3D01G277000.1	Wheat	plastid	50.45	53.36
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	50.45	53.14
Zm00001d043519_P004	Maize	plastid	49.81	52.46
Zm00001d043517_P002	Maize	mitochondrion	49.94	51.82
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	29.96	51.11
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	51.23	50.9
TraesCS3D01G276900.1	Wheat	plastid	48.77	50.4
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	18.68	50.35
VIT_00s0352g00020.t01	Wine grape	mitochondrion	18.16	49.12
TraesCS3B01G310900.1	Wheat	cytosol	49.29	47.5
VIT_00s0285g00060.t01	Wine grape	cytosol	23.35	47.49
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	18.68	47.37
TraesCS3A01G276700.1	Wheat	cytosol	49.16	47.26
VIT_08s0032g00670.t01	Wine grape	cytosol	25.16	47.09
CDY44276	Canola	plastid	9.47	43.71
VIT_11s0065g00570.t01	Wine grape	cytosol	5.06	31.2
HORVU5Hr1G103870.2	Barley	mitochondrion	7.13	14.4

Protein Annotations

Gene3D:1.20.930.40	EntrezGene:100247495	wikigene:100247495	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30
ProteinID:CCB51478	ProteinID:CCB51478.1	ncoils:Coil	UniProt:F6HGY0	EMBL:FN595756	InterPro:IPR036757
EntrezGene:LOC100247495	wikigene:LOC100247495	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389
PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187
InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	UniParc:UPI0002107F64	ArrayExpress:VIT_11s0016g03010	EnsemblPlantsGene:VIT_11s0016g03010	EnsemblPlants:VIT_11s0016g03010.t01
unigene:Vvi.23137	RefSeq:XP_002283565	RefSeq:XP_002283565.2	RefSeq:XP_003633117	RefSeq:XP_003633117.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:2421905..2430944

Molecular Weight (calculated)

85035.8 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.344

Length

771 amino acids

Sequence
(BLAST)

001: MDQRDGTYSV SSGNQKQCND LESLWCVSEL FLLNRSFQNP QSRLEQSSFT TNIQASKKST DNQKSNPMFK VSICTAIATS LFFLLFSSPP KPSHHSLYIS
101: SSLSDNASIS HHLYTLTRRP HIAGSKANAD AAAYVLSTLS SYAIKSHIVS YDVALTYPVS RSLTLIRPSP EPSTTFDLRQ EIYDGDPYAD VASEVVPTFH
201: AYAKSGTVAG PVVYVNYGRV EDYEVLKEMG VSVEGTVVLA RYGKIFRGDI VQNAFAAGAI GAVVYTDRKD YGGGGGDARW FPDDKWMPPS GVQVGSLLTV
301: DGDPTTPGWA STRDECERLS EEEVENGGGV GMIPSLPISA ADGEAIMRTI GGQVANDDWQ GSTDAPVYRV GPGPAILNLS YTGEQKITTI QNVFGVIEGT
401: EEPDRFVLLG NHRDAWTFGA VDPNSGTATL LEVAQRLRKL QKRGWRPRRT IVLCNWDAEE YGLTGSTEWV EENREMLASK AIAYLNVDSA VSGAGFYASA
501: TPQLDELLKQ ATQQVQDPDN SSQSIYESWV GSSNSPIIGR LGGGGSDFAA FVQHVGVPAT DISFGAGYPV YHSMYDDFIW MKKFGDPMFH RHAAAASIWG
601: LVALRLADEE FLPFDYLSYA YELQKSAKEL EGEISNKGIN LIPLFKSIEK FKRAATKINH QRKEIEENKG WASIWKKEHL KVRELNDRLM MAERAFTDRD
701: GLLGRPWYKH LIYGPLKHDD YGSKSFPGID DAIEKAKSQS TEKSWSLVQH EVWRVSRAVI DASLVLNGEL T

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.