Factsheet for VIT_00s0327g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0352g00020.t01	Wine grape	mitochondrion	86.01	86.32
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	81.12	76.32
KRH03146	Soybean	mitochondrion	23.78	68.69
VIT_00s0285g00060.t01	Wine grape	cytosol	80.07	60.42
VIT_08s0032g00670.t01	Wine grape	cytosol	83.92	58.25
KRH07659	Soybean	cytosol, extracellular, plastid	22.73	54.62
GSMUA_Achr4P31300_001	Banana	cytosol	59.44	43.7
HORVU5Hr1G103900.13	Barley	cytosol	51.4	36.75
CDX76133	Canola	cytosol	57.69	35.64
Solyc11g045250.1.1	Tomato	plastid	69.23	33.73
KRG96329	Soybean	plasma membrane	66.78	27.44
KRH68064	Soybean	endoplasmic reticulum	66.43	27.38
KRH32940	Soybean	plastid	65.03	26.76
GSMUA_Achr5P02690_001	Banana	mitochondrion	58.04	23.78
Bra014794.1-P	Field mustard	plastid	57.34	23.46
CDX78257	Canola	plastid	57.69	23.4
CDX73456	Canola	plastid	57.34	23.36
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	58.04	23.31
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	58.04	23.31
Bra007091.1-P	Field mustard	plastid	57.34	23.26
AT3G54720.1	Thale cress	plastid	57.34	23.26
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.69	23.17
EER93326	Sorghum	plasma membrane, vacuole	54.9	22.08
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	54.2	21.74
Os03t0790600-01	Rice	mitochondrion	57.69	21.37
VIT_11s0016g03010.t01	Wine grape	cytosol	50.35	18.68
VIT_11s0065g00570.t01	Wine grape	cytosol	1.05	2.4
HORVU3Hr1G104570.2	Barley	plastid	1.4	1.33
HORVU3Hr1G080240.1	Barley	plastid	1.4	1.33
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	1.4	1.32
HORVU6Hr1G029960.1	Barley	mitochondrion	0.35	0.52
CDX76132	Canola	plastid	0.35	0.5
Solyc11g045240.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0327g00020	EMBL:FN595788	EnsemblPlants:VIT_00s0327g00020.t01	EnsemblPlantsGene:VIT_00s0327g00020	EntrezGene:100853703	EntrezGene:LOC100853703
Gene3D:3.40.630.10	InterPro:Peptidase_M28	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63	PFAM:PF04389	ProteinID:CCB52978
ProteinID:CCB52978.1	RefSeq:XP_003635237	RefSeq:XP_003635237.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF53187
UniParc:UPI0002109322	UniProt:F6HJP6	wikigene:100853703	wikigene:LOC100853703	MapMan:19.4.5.7.3	:

Description

No Description!

Coordinates

chrUn:-:23597329..23603549

Molecular Weight (calculated)

32156.7 Da

IEP (calculated)

6.167

GRAVY (calculated)

0.022

Length

286 amino acids

Sequence
(BLAST)

001: MSGKLLLKPA CGKLIELFLH LFYFFPLFQA EKKIATIHNV FAVIRGSEEP DRYVLLGNHR DAWTYGAVDP NSGTAVLLDI ARRYALMMRQ GWQPRRTIVL
101: CSWDAEEFGM VANISSLGST EWVEQNLLNL GSKVVAYLNV DCAVQGPGFF AGATPQLDNL LIEVAKKVQD PDSESMTIYD NWMITNKVIN IQRLSGVDSD
201: FSPLLQHAGV PSVDLYYGRD FPVYHTAFDS YNWMTNHGDP LFQRHVAVAG VWGLLALHLA DDPILPFNYV LHRTIMELHK SPTQLG

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.