Factsheet for VIT_08s0032g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	58.25	83.92
VIT_00s0352g00020.t01	Wine grape	mitochondrion	56.55	81.75
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	56.07	75.99
KRH03146	Soybean	mitochondrion	15.78	65.66
VIT_00s0285g00060.t01	Wine grape	cytosol	57.77	62.8
GSMUA_Achr4P31300_001	Banana	cytosol	58.98	62.47
Solyc11g045240.1.1	Tomato	cytosol	12.14	61.73
KRH07659	Soybean	cytosol, extracellular, plastid	16.5	57.14
HORVU5Hr1G103900.13	Barley	cytosol	52.67	54.25
CDX76133	Canola	cytosol	58.5	52.05
KRH32940	Soybean	plastid	67.72	40.14
KRG96329	Soybean	plasma membrane	67.72	40.09
KRH68064	Soybean	endoplasmic reticulum	67.23	39.91
Solyc11g045250.1.1	Tomato	plastid	52.91	37.14
GSMUA_Achr5P02690_001	Banana	mitochondrion	61.16	36.1
AT3G54720.1	Thale cress	plastid	59.95	35.04
Bra014794.1-P	Field mustard	plastid	58.74	34.62
Bra007091.1-P	Field mustard	plastid	58.98	34.47
CDX73456	Canola	plastid	58.5	34.33
CDX78257	Canola	plastid	58.5	34.18
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.28	33.15
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	57.28	33.15
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	56.8	32.87
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	56.31	32.54
EER93326	Sorghum	plasma membrane, vacuole	55.83	32.35
Os03t0790600-01	Rice	mitochondrion	56.31	30.05
VIT_11s0016g03010.t01	Wine grape	cytosol	47.09	25.16
HORVU3Hr1G104570.2	Barley	plastid	1.7	2.33
HORVU3Hr1G080240.1	Barley	plastid	1.7	2.33
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	1.7	2.32
VIT_11s0065g00570.t01	Wine grape	cytosol	0.49	1.6
HORVU6Hr1G029960.1	Barley	mitochondrion	0.73	1.56
CDX76132	Canola	plastid	0.49	1.01

Protein Annotations

Gene3D:1.20.930.40	EntrezGene:100247933	wikigene:100247933	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	ProteinID:CCB61548
ProteinID:CCB61548.1	ncoils:Coil	UniProt:F6I3N8	EMBL:FN596742	InterPro:IPR036757	EntrezGene:LOC100247933
wikigene:LOC100247933	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63	InterPro:Peptidase_M28
SUPFAM:SSF47672	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	UniParc:UPI0002109F22	ArrayExpress:VIT_08s0032g00670
EnsemblPlantsGene:VIT_08s0032g00670	EnsemblPlants:VIT_08s0032g00670.t01	unigene:Vvi.25626	RefSeq:XP_002267275	RefSeq:XP_002267275.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:4059286..4067122

Molecular Weight (calculated)

46257.2 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.221

Length

412 amino acids

Sequence
(BLAST)

001: MGGGLGYGPL QGMRPWELSY ECLFAEKKIA TIHNVFAIIR GSEEPDRYVL LGNHRDAWTY GAVDPNSGTA VLLDIARRYA LMMRQGWQPR RTIVLCSWDA
101: EEFGMIGSTE WVEQNLLNLG SKVVAYLNVD CAVQGPGFFA GATPQLDNLL IEVAKKVQDP DSESMTIYDN WMITNKVINI QRLSGVDSDF APLLQHAGVP
201: SVDLYYGRDF PVYHTAFDSY DWMTNHGDPL FQRHVAVAGV WGLLALHLAD DPILPFNYVS YTEQLWNYTN LLRNLVKGNV SLHPITASIQ ELASAAEEAE
301: GEAKKLREEE RNSEFLVLKK RALNDRLMLA ERGFLDADGL QGRQWFKHLV YGPRGDSESK LIFFPGIADA ISASTRMKRK EGEAAIQHEI WRVARAIERA
401: SSALRGGIFT EK

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.