CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014794.1-P	Field mustard	plastid	92.96	26.47
HORVU6Hr1G029960.1	Barley	mitochondrion	19.6	20.31
CDX78257	Canola	plastid	71.36	20.14
AT3G54720.1	Thale cress	plastid	70.85	20.0
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	30.15	19.87
HORVU3Hr1G104570.2	Barley	plastid	28.14	18.6
HORVU3Hr1G080240.1	Barley	plastid	27.14	17.94
CDX73456	Canola	plastid	62.81	17.81
Solyc11g045250.1.1	Tomato	plastid	38.69	13.12
KRH32940	Soybean	plastid	44.72	12.81
KRH68064	Soybean	endoplasmic reticulum	41.71	11.96
KRG96329	Soybean	plasma membrane	40.7	11.64
GSMUA_Achr5P02690_001	Banana	mitochondrion	33.67	9.6
EER93326	Sorghum	plasma membrane, vacuole	32.66	9.14
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.66	9.13
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	32.66	9.12
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	31.66	8.85
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	30.65	8.57
Os03t0790600-01	Rice	mitochondrion	32.16	8.29
CDY44276	Canola	plastid	6.53	7.78
CDX92505	Canola	plasma membrane, plastid	25.63	7.62
CDY42292	Canola	endoplasmic reticulum, plasma membrane	25.63	7.54
CDY35864	Canola	plasma membrane, plastid	25.13	7.49
CDY35863	Canola	plastid	4.52	3.21
VIT_00s0285g00060.t01	Wine grape	cytosol	2.01	1.06
VIT_11s0065g00570.t01	Wine grape	cytosol	0.5	0.8
VIT_08s0032g00670.t01	Wine grape	cytosol	1.01	0.49
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.5	0.35
CDX76133	Canola	cytosol	0.5	0.22
Solyc11g045240.1.1	Tomato	cytosol	0.0	0.0
VIT_00s0352g00020.t01	Wine grape	mitochondrion	0.0	0.0
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.0	0.0
KRH07659	Soybean	cytosol, extracellular, plastid	0.0	0.0
KRH03146	Soybean	mitochondrion	0.0	0.0
HORVU5Hr1G103900.13	Barley	cytosol	0.0	0.0
GSMUA_Achr4P31300_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX76132	EnsemblPlantsGene:GSBRNA2T00126420001	Gene3D:3.50.30.30	GO:A0A078CHB5	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63
ProteinID:CDX76132	ProteinID:CDX76132.1	SUPFAM:SSF52025	TMHMM:TMhelix	UniParc:UPI0004EF188C	MapMan:19.4.5.7.3

Description

BnaA04g03960D

Coordinates

chrLK031806:+:1233566..1234220

Molecular Weight (calculated)

22235.5 Da

IEP (calculated)

8.126

GRAVY (calculated)

-0.081

Length

199 amino acids

Sequence
(BLAST)

001: MSQPLTTVAG ISFRHPPPLC SFLFIIVLLV ATFYTLHHPD ATPPHLFSPK THNPLTLRRL FLSSASNATV SSYLRSLTRH PHLAGTKPSL DTLTYVLNHF
101: QSLRLDDTRV AEYEALLSYP THISVTARFS NNTTVEFDLN DDVSSSSEVV TPYHAYSPSG SAQGSVVFVN RGEERDYRAL EMIGVSVRGC LRLKVRWEC

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.