CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007091.1-P	Field mustard	plastid	94.75	94.75
CDX73456	Canola	plastid	89.93	90.31
CDX76133	Canola	cytosol	56.88	86.61
AT3G54720.1	Thale cress	plastid	83.26	83.26
CDX76132	Canola	plastid	20.14	71.36
KRH03146	Soybean	mitochondrion	9.08	64.65
GSMUA_Achr4P31300_001	Banana	cytosol	32.62	59.13
KRH07659	Soybean	cytosol, extracellular, plastid	9.93	58.82
VIT_08s0032g00670.t01	Wine grape	cytosol	34.18	58.5
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	23.4	57.69
VIT_00s0352g00020.t01	Wine grape	mitochondrion	23.26	57.54
VIT_00s0285g00060.t01	Wine grape	cytosol	30.78	57.26
Solyc11g045240.1.1	Tomato	cytosol	6.52	56.79
KRH32940	Soybean	plastid	55.6	56.4
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	24.11	55.92
KRG96329	Soybean	plasma membrane	54.89	55.6
KRH68064	Soybean	endoplasmic reticulum	54.18	55.04
Solyc11g045250.1.1	Tomato	plastid	44.11	52.98
HORVU5Hr1G103900.13	Barley	cytosol	28.09	49.5
EER93326	Sorghum	plasma membrane, vacuole	47.52	47.12
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	47.38	46.84
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.23	46.77
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	46.81	46.35
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	46.52	46.07
GSMUA_Achr5P02690_001	Banana	mitochondrion	45.39	45.85
Os03t0790600-01	Rice	mitochondrion	47.94	43.78
VIT_11s0065g00570.t01	Wine grape	cytosol	7.66	43.2
CDY42292	Canola	endoplasmic reticulum, plasma membrane	40.85	42.6
CDY35864	Canola	plasma membrane, plastid	39.57	41.77
CDX92505	Canola	plasma membrane, plastid	39.29	41.41
HORVU6Hr1G029960.1	Barley	mitochondrion	11.21	41.15
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	15.6	36.42
HORVU3Hr1G104570.2	Barley	plastid	15.46	36.21
HORVU3Hr1G080240.1	Barley	plastid	14.75	34.55
CDY44276	Canola	plastid	7.52	31.74
CDY35863	Canola	plastid	8.09	20.36

Protein Annotations

EnsemblPlants:CDX78257	EnsemblPlantsGene:GSBRNA2T00129592001	Gene3D:1.20.930.40	Gene3D:3.40.630.10	Gene3D:3.50.30.30	InterPro:IPR036757
InterPro:Peptidase_M28	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	ncoils:Coil	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63
PFAM:PF04253	PFAM:PF04389	ProteinID:CDX78257	ProteinID:CDX78257.1	SEG:seg	SUPFAM:SSF47672
SUPFAM:SSF52025	SUPFAM:SSF53187	UniParc:UPI0004EEEC28	MapMan:19.4.5.7.3	:	:

Description

BnaA09g34520D

Coordinates

chrLK031814:-:2023516..2026754

Molecular Weight (calculated)

76841.8 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.118

Length

705 amino acids

Sequence
(BLAST)

001: MSQPLTATRP TTAGISLSPL RQPPPLCTFL FIIVLIVATF YTLHHPDATP PLLFSRNTHN SLTLRRLFLS SASNATISSY LRALTRHPHL AGTKPSLDTL
101: SYVTNHFQSL GLDTRLAEYE ALLSYPAHIS LAARFSNNTT VEFDLNDVTA DDDVIRPYHA YSPSGSAQGS VVFVNHGEER DYRALELIGV SVRGCVVLAR
201: KGESLGRGGM VKIAESKGAL GMLIYAENDG GGLGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLEDGEVT KRFPKIPSLP LSLRNAEIIL ASLGGARAPV
301: EWRNSGRVGS GQRVGPEQTV VNMTLQGELK MKKVHNVVAT IRGSEEPDRY VILGNHRDAW TYGAVDPNSG TSALLDIGRR FSVLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWVEENVLN LGASAVAYLN VDCAVQGSGF FAGSTPQLDG LLLDALKLVQ DPDDVALTVE DTFKSQNNII ERLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIRNADPL FHRHVAMAGV WGLLGIILAD EPVIPFNYIS YAEQLHAHRD ALSKLLVGKA SVDPLSMAIK EFSLVAKEAK
601: DEAKKLKEQA YNKNDAAAAA RRRGLNDRMM LAERGFLDSE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAVNSSEG MIQHEIWRVA RAIQKASRAL
701: KGGFT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.