CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
vacuole 3
endoplasmic reticulum 4
extracellular 3
cytosol 1
plasma membrane 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96329	Soybean	plasma membrane	87.03	86.78
KRH03146	Soybean	mitochondrion	10.81	75.76
KRH32940	Soybean	plastid	71.33	71.22
KRH07659	Soybean	cytosol, extracellular, plastid	11.82	68.91
VIT_08s0032g00670.t01	Wine grape	cytosol	39.91	67.23
VIT_00s0285g00060.t01	Wine grape	cytosol	36.6	67.02
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	27.38	66.43
VIT_00s0352g00020.t01	Wine grape	mitochondrion	27.09	65.96
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	27.38	62.5
GSMUA_Achr4P31300_001	Banana	cytosol	33.86	60.41
Solyc11g045250.1.1	Tomato	plastid	50.0	59.11
CDX76133	Canola	cytosol	38.62	57.88
VIT_11s0065g00570.t01	Wine grape	cytosol	10.09	56.0
Bra007091.1-P	Field mustard	plastid	55.33	54.47
CDX78257	Canola	plastid	55.04	54.18
AT3G54720.1	Thale cress	plastid	54.76	53.9
CDX73456	Canola	plastid	54.32	53.7
Solyc11g045240.1.1	Tomato	cytosol	6.2	53.09
Bra014794.1-P	Field mustard	plastid	53.31	52.93
HORVU5Hr1G103900.13	Barley	cytosol	29.54	51.25
EER93326	Sorghum	plasma membrane, vacuole	51.01	49.79
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	50.43	49.09
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.29	49.02
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	50.14	48.88
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	50.0	48.74
GSMUA_Achr5P02690_001	Banana	mitochondrion	47.84	47.56
Os03t0790600-01	Rice	mitochondrion	50.86	45.73
KRH74232	Soybean	endoplasmic reticulum, plastid	30.55	42.32
CDX76132	Canola	plastid	11.96	41.71
KRH74227	Soybean	cytosol	12.1	40.78
HORVU6Hr1G029960.1	Barley	mitochondrion	11.24	40.62
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	16.28	37.42
HORVU3Hr1G104570.2	Barley	plastid	15.71	36.21
HORVU3Hr1G080240.1	Barley	plastid	15.13	34.88

Protein Annotations

Gene3D:1.20.930.40	EntrezGene:100818733	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	EMBL:ACUP02002098
ncoils:Coil	EnsemblPlantsGene:GLYMA_03G205900	UniProt:I1JQD5	InterPro:IPR036757	EnsemblPlants:KRH68064	ProteinID:KRH68064
ProteinID:KRH68064.1	MEROPS:M28.007	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	UniParc:UPI00023C1310	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:41375363..41381589

Molecular Weight (calculated)

75866.3 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.111

Length

694 amino acids

Sequence
(BLAST)

001: MMPKQPMNVL TTKPSPLSTM VVMLILCILG FYALHFPHSS TPSENLSHLE KLFLSTSSNS TISSYLRALT MHPHLAGTKP ASDTTRYVLN HFTSLGLSAH
101: TTTYTTLLSF PVRSSLSAHF NDGSSVSLRL TEEASGAGVV AAYHAYSPSG AVHAPAVFAN YGRQRDYRAL AAMGVNVSGC VVVVRKGGEM GRGAVVERAE
201: VNGAAAVLVY GEGDTWRKGF ERGHVMRGGI GDPLTPGWAG VEGAETLGLE DREVLKRFPK IPSMPLSAEV ADTILSSLGG VHVPLHWRGT LRSKVRHVGP
301: GPTLLNFTYE GEKKVATIQN VFAVIKGSEE PDRYVLLGNH RDAWTYGAVD PSSGTAALLD IARRFSALLG LGWKPRRTII LCSWDAEEFG MIGSTEWVEQ
401: NLINLGSKAV AYLNVDCAVQ GPDFFVGSTP QLDNLILEVT NKVKDPDSDG VSLYENWAAG GGGNNIQRLS GVDSDFAPFV QHAGVPSIDM YYGRDFPVYH
501: TAFDSYNWMA EYGDPFFHRH VAVTGVWGLL ALHLADDPIL PFNYVSYANE LQLYKNTLSN LIDQKISLHP LTLSIEEFAS AAKEADDEIK KLRLQETEGC
601: FVDMKKRALN DRLMLAEKGF LDADGLQGKQ WFKHLVFGPS SDHERINFFP GISDSTITSA GVSERERLAS IQHEIWRVAR AIRRAASALR GEFT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.