CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78257	Canola	plastid	90.31	89.93
CDX76133	Canola	cytosol	59.26	89.85
AT3G54720.1	Thale cress	plastid	83.76	83.4
KRH03146	Soybean	mitochondrion	9.12	64.65
CDX76132	Canola	plastid	17.81	62.81
KRH07659	Soybean	cytosol, extracellular, plastid	9.97	58.82
VIT_08s0032g00670.t01	Wine grape	cytosol	34.33	58.5
GSMUA_Achr4P31300_001	Banana	cytosol	32.19	58.1
VIT_00s0285g00060.t01	Wine grape	cytosol	31.05	57.52
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	23.36	57.34
VIT_00s0352g00020.t01	Wine grape	mitochondrion	23.08	56.84
KRG96329	Soybean	plasma membrane	55.27	55.75
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	24.07	55.59
Solyc11g045240.1.1	Tomato	cytosol	6.41	55.56
KRH32940	Soybean	plastid	54.99	55.54
Solyc11g045250.1.1	Tomato	plastid	45.58	54.51
KRH68064	Soybean	endoplasmic reticulum	53.7	54.32
HORVU5Hr1G103900.13	Barley	cytosol	28.06	49.25
EER93326	Sorghum	plasma membrane, vacuole	47.58	46.98
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	47.44	46.7
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.29	46.63
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	47.15	46.49
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.01	46.35
GSMUA_Achr5P02690_001	Banana	mitochondrion	44.73	44.99
VIT_11s0065g00570.t01	Wine grape	cytosol	7.98	44.8
Os03t0790600-01	Rice	mitochondrion	47.72	43.39
CDY42292	Canola	endoplasmic reticulum, plasma membrane	40.88	42.46
CDY35864	Canola	plasma membrane, plastid	39.17	41.17
HORVU6Hr1G029960.1	Barley	mitochondrion	11.25	41.15
CDX92505	Canola	plasma membrane, plastid	39.17	41.11
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	15.95	37.09
HORVU3Hr1G104570.2	Barley	plastid	15.24	35.55
HORVU3Hr1G080240.1	Barley	plastid	14.81	34.55
CDY44276	Canola	plastid	7.26	30.54
CDY35863	Canola	plastid	7.83	19.64

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	GO:A0A078C8Q4	EnsemblPlants:CDX73456
ProteinID:CDX73456	ProteinID:CDX73456.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00108961001	InterPro:IPR036757	PFAM:PF04253
PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63	InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025
SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	TMHMM:TMhelix	UniParc:UPI0004EE62F7	SEG:seg

Description

BnaC08g25470D

Coordinates

chrLK031799:+:500338..503345

Molecular Weight (calculated)

76512.1 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.121

Length

702 amino acids

Sequence
(BLAST)

001: MSQPLTATRP TNAATSIFPL RQPPPLCSFL FIIVLIVATF YTLHHPDATP PLLFSHNALT LRRLFLSSAS NATVSSYLRA LTRHPHLAGT KPSLDTLSYV
101: TNHFQSLGLD THLAEYEALL SYPAHISVAA RFSNNTTVEF DLNDGPGDDD VVRPYHAYSP SGSAQGNVVF VNHGEERDYR ALELIGVSVR DCVVLARKGE
201: SLGRGGIVKI AEAKGALGVL IYAENDGGGF GGIERGTVMR GIGDPVSPGW PGVVGGEKLS LEDDRVARRF PKIPSLPLSL RNAEIILASL GGARAPVEWR
301: NSGRVGSGQR VGPGQTVVNM TLQGELTMKK VHNVVATIRG SEEPDRYVIL GNHRDAWTYG AVDPNSGTSA LLDIGRRFSV LLKSGWRPRR TILLCSWDAE
401: EFGMIGSTEW VEENVLNLGA SAVAYLNVDC AVQGSGFFAG ATPQLDGLLL DALKLVQDPD DVALTVEETF KSQNNIIERL SRVDSDFSGF LHHAGIASID
501: MYYGADYPVY HTAFDSYDWM IRNADPLFHR HVAMAGVWGL LGIILADEPV LPFNYISYAE QLQAHRDALS KLLQGKASVD PLSMAIQEFS LVAKEAQDEA
601: KKLKEQAYNK NDVAAAAKRR ELNDRMMLGE RGFLDSEGIK GKEWFKHLVY GPAAEPESKL GFFPGIADAI ATNSSEGMIE HEIWRVARAI QRASRALKGG
701: FT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.