Factsheet for VIT_00s0352g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5
extracellular 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	86.32	86.01
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	80.0	75.0
KRH03146	Soybean	mitochondrion	22.81	65.66
VIT_00s0285g00060.t01	Wine grape	cytosol	79.3	59.63
VIT_08s0032g00670.t01	Wine grape	cytosol	81.75	56.55
KRH07659	Soybean	cytosol, extracellular, plastid	22.46	53.78
GSMUA_Achr4P31300_001	Banana	cytosol	58.25	42.67
HORVU5Hr1G103900.13	Barley	cytosol	51.23	36.5
CDX76133	Canola	cytosol	56.84	34.99
Solyc11g045250.1.1	Tomato	plastid	69.12	33.56
KRG96329	Soybean	plasma membrane	66.32	27.16
KRH68064	Soybean	endoplasmic reticulum	65.96	27.09
KRH32940	Soybean	plastid	65.26	26.76
GSMUA_Achr5P02690_001	Banana	mitochondrion	58.25	23.78
CDX78257	Canola	plastid	57.54	23.26
Bra014794.1-P	Field mustard	plastid	56.84	23.18
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	57.89	23.17
CDX73456	Canola	plastid	56.84	23.08
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	57.54	23.03
Bra007091.1-P	Field mustard	plastid	56.84	22.98
AT3G54720.1	Thale cress	plastid	56.84	22.98
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.19	22.89
EER93326	Sorghum	plasma membrane, vacuole	55.44	22.22
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	54.74	21.88
Os03t0790600-01	Rice	mitochondrion	57.54	21.24
VIT_11s0016g03010.t01	Wine grape	cytosol	49.12	18.16
VIT_11s0065g00570.t01	Wine grape	cytosol	1.05	2.4
HORVU3Hr1G104570.2	Barley	plastid	2.11	1.99
HORVU3Hr1G080240.1	Barley	plastid	2.11	1.99
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	2.11	1.99
HORVU6Hr1G029960.1	Barley	mitochondrion	0.7	1.04
Solyc11g045240.1.1	Tomato	cytosol	0.0	0.0
CDX76132	Canola	plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0352g00020	EMBL:FN595267	EnsemblPlants:VIT_00s0352g00020.t01	EnsemblPlantsGene:VIT_00s0352g00020	Gene3D:3.40.630.10	InterPro:Peptidase_M28
MEROPS:M28.007	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63	PFAM:PF04389	ProteinID:CBI23457	ProteinID:CBI23457.3
SUPFAM:SSF53187	UniParc:UPI0001BE1F2A	UniProt:D7SYY9	MapMan:19.4.5.7.3	:	:

Description

No Description!

Coordinates

chrUn:+:25095978..25102339

Molecular Weight (calculated)

32159.7 Da

IEP (calculated)

6.229

GRAVY (calculated)

-0.049

Length

285 amino acids

Sequence
(BLAST)

001: MLLFPSKKCN LRVWGLCKVY ASSSIDIKAM LQVEKKIATI HNVFAIIRGS EEPDRYVLLG NHRDAWTYGA VDPNSGTAVL LDIARRYALM MRQGWQPQRT
101: IVLCSWDADE FGMIGSTEWV EQNLLNLGSK VVAYLNVDCA VQGPGFFAGA TPQLDNLLIE VAKKVQDPDS ESMTIYDNWM ITNKVINIQR LSGVDYDFAP
201: LLQHAGVPSV DLYYGRDFPV YHTAFDSYNW MTNHGDPLFQ RHVAVAGVWG LLALHLADDP ILPFNYVLHR TIMELHKSPT QLGER

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.