CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03146	Soybean	mitochondrion	13.82	64.65
Bra014794.1-P	Field mustard	plastid	96.98	64.23
CDX73456	Canola	plastid	89.85	59.26
VIT_08s0032g00670.t01	Wine grape	cytosol	52.05	58.5
AT3G54720.1	Thale cress	plastid	88.98	58.44
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	35.64	57.69
GSMUA_Achr4P31300_001	Banana	cytosol	48.38	57.58
CDX78257	Canola	plastid	86.61	56.88
VIT_00s0352g00020.t01	Wine grape	mitochondrion	34.99	56.84
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	36.72	55.92
KRH07659	Soybean	cytosol, extracellular, plastid	14.25	55.46
VIT_00s0285g00060.t01	Wine grape	cytosol	42.98	52.51
Solyc11g045240.1.1	Tomato	cytosol	8.86	50.62
HORVU5Hr1G103900.13	Barley	cytosol	43.41	50.25
KRH32940	Soybean	plastid	60.69	40.43
KRG96329	Soybean	plasma membrane	59.61	39.66
KRH68064	Soybean	endoplasmic reticulum	57.88	38.62
Solyc11g045250.1.1	Tomato	plastid	47.95	37.82
EER93326	Sorghum	plasma membrane, vacuole	54.43	35.44
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	54.43	35.39
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	54.21	35.25
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	53.78	34.97
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	53.78	34.92
GSMUA_Achr5P02690_001	Banana	mitochondrion	51.19	33.95
Os03t0790600-01	Rice	mitochondrion	54.64	32.77
CDY42292	Canola	endoplasmic reticulum, plasma membrane	46.65	31.95
VIT_11s0065g00570.t01	Wine grape	cytosol	8.42	31.2
CDX92505	Canola	plasma membrane, plastid	44.92	31.09
CDY35864	Canola	plasma membrane, plastid	44.49	30.84
CDY44276	Canola	plastid	8.21	22.75
CDY35863	Canola	plastid	7.78	12.86
HORVU6Hr1G029960.1	Barley	mitochondrion	4.54	10.94
HORVU3Hr1G080240.1	Barley	plastid	6.05	9.3
HORVU3Hr1G104570.2	Barley	plastid	6.05	9.3
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	5.83	8.94
CDX76132	Canola	plastid	0.22	0.5

Protein Annotations

EnsemblPlants:CDX76133	EnsemblPlantsGene:GSBRNA2T00126421001	Gene3D:1.20.930.40	Gene3D:3.40.630.10	InterPro:IPR036757	InterPro:Peptidase_M28
InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	ncoils:Coil	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63	PFAM:PF04253
PFAM:PF04389	ProteinID:CDX76133	ProteinID:CDX76133.1	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187
UniParc:UPI0004EF31E2	MapMan:19.4.5.7.3	:	:	:	:

Description

BnaA04g03970D

Coordinates

chrLK031806:+:1234274..1236525

Molecular Weight (calculated)

51064.9 Da

IEP (calculated)

5.799

GRAVY (calculated)

-0.174

Length

463 amino acids

Sequence
(BLAST)

001: MRGIGDPVSP GWPGVTGGEK LSLDDDRVSR RFPKIPSLPL SLHNAEILLA SLGGARAPVE WRSGRVGSSQ RVGPGRVVVN MTLQGEMKMK KIHNVVATIR
101: GSEEPDRYVI LGNHRDAWTY GAVDPNSGTS ALLDIGRRFA LLLESGWRPR RTILLCSWDA EEFGMIGSTE WVEEHVLNLG ASAVAYLNVD CAVQGSGFFA
201: GATPQLDSVL VDALKLVQDP DDVTLTVEET FKSQNNIIER LSRVDSDFSG FLHHAGIPSI DMYYGADYPV YHTAFDSYDW MIRNADPLFH RHVAMAGIWG
301: LLGIILADEP VLPFDYISYA EQLQAHRDAV CKLLEGKVSI DPLSVAIQEF SLVAKEVTDE AKKLKEQAYS KNDVAVAAKR RELNDRMMLA ERGFLDSEGI
401: KGKEWFKHLV YGPAAEPESK LGFFPGIADA IETNSSEGII KHEIWRVTRA IQRASKALKG GFT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.