CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	CDY16196	AT1G26830.1	15749712
AT4G07670.1	CDY45004	AT1G26830.1	15749712
AT4G07670.1	CDY46437	AT1G26830.1	15749712
AT4G07670.1	CDY50732	AT1G26830.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92505	Canola	plasma membrane, plastid	90.87	90.73
CDY42292	Canola	endoplasmic reticulum, plasma membrane	81.29	80.33
AT5G19740.1	Thale cress	vacuole	78.89	77.39
AT4G07670.1	Thale cress	cytosol	29.04	69.29
Solyc12g008540.1.1	Tomato	extracellular	8.53	67.86
KRH74232	Soybean	endoplasmic reticulum, plastid	47.9	63.87
KRH74227	Soybean	cytosol	19.16	62.14
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	64.07	61.76
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.5	60.62
CDY44276	Canola	plastid	14.67	58.68
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	57.48	56.64
VIT_11s0016g03010.t01	Wine grape	cytosol	64.67	56.03
Os01t0740600-01	Rice	cytosol	7.19	55.17
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.93	53.38
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	57.63	53.03
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	57.48	52.75
Zm00001d012765_P005	Maize	extracellular	56.59	52.14
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.48	51.2
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.48	51.2
Os01t0740500-00	Rice	plastid	55.24	50.48
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	33.53	49.56
Zm00001d043517_P002	Maize	mitochondrion	54.64	49.13
TraesCS3A01G276800.2	Wheat	plastid	53.59	49.11
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.04	49.1
TraesCS3D01G276900.1	Wheat	plastid	54.64	48.93
TraesCS3B01G311000.1	Wheat	plastid	53.29	48.83
TraesCS3D01G277000.1	Wheat	plastid	53.29	48.83
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	53.44	48.77
Zm00001d043519_P004	Maize	plastid	52.4	47.81
TraesCS3B01G310900.1	Wheat	cytosol	54.94	45.88
TraesCS3A01G276700.1	Wheat	cytosol	54.79	45.64
CDX76133	Canola	cytosol	30.84	44.49
CDX78257	Canola	plastid	41.77	39.57
CDX73456	Canola	plastid	41.17	39.17
CDX76132	Canola	plastid	7.49	25.13
CDY35863	Canola	plastid	7.63	18.21
HORVU5Hr1G103870.2	Barley	mitochondrion	8.38	14.66

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	UniProt:A0A078HEJ8	EnsemblPlants:CDY35864
ProteinID:CDY35864	ProteinID:CDY35864.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00059398001	InterPro:IPR036757	InterPro:PA_domain
PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28
SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	SignalP:SignalP-noTM	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	UniParc:UPI0004EE3B95	SEG:seg	:	:	:

Description

BnaC09g37960DBnaC09g37960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEJ8]

Coordinates

chrLK032362:-:359747..362635

Molecular Weight (calculated)

73114.1 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.224

Length

668 amino acids

Sequence
(BLAST)

001: MSKPTAALVF LIAAFSYFLF SPSPKPHYYH TLFLSSPFSD NASIASNLRT LTRRPHVAGS LANAEAASHV LSSFASSSLK PRVAAYKVSL TYPVHRSLSL
101: TPTESSKSII TFSLEQEHLG DNPYADEVTP TFHAYAKSGD VSGPAAYANY GRVEDFAGLN VSGAVVVARY GKIYRGDIVR NAYEAGAVGV VIYTDERDYG
201: GEECFPESRW MPPSGVQVGT VYNGLGDPTT PGWASVDGCE RLSEEEVELR GDSPGIPSLP ISAADAEVIL KSVVGGVGPG PGILNLSYVG KTVLAEIENV
301: IGVIEGGEEP DRYVILGNHR DAWTFGAVDP NSGTAVLLEI AQRLDKLQKR GWKPRRTIIL CNWDAEEYAL IGSTEWVEDN RQMLASRAVA YLNADCAVSG
401: PGFRASATPQ LDDLIKQVAK EVRDPDNTTQ SIYESWIRSN NSGVIGRLGS GASDYASFVQ HVGVPVVDML FGGGYPVYHS MYDDFTWMEK FGDPMFHRHV
501: AIASVLGMVA LRLADDEFLP FNYTSYASEL KKSAEDLEEE MLAHSIDISP LIKSIQDLST AAQEINIEKE EGVKGALRVR EVNDRLMMAE RALTDRDGLS
601: GRTWYKHLVY GPSKYDDYGS KSFPGVDDAI DNAKRVKTKA SWEHVQHEIW RVSRAIRHAS LVLKGELR

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.